Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NST80_RS02845 Genome accession   NZ_CP152039
Coordinates   556173..557102 (+) Length   309 a.a.
NCBI ID   WP_014634820.1    Uniprot ID   A0AAP3Q635
Organism   Streptococcus sp. FSL K6-1323     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 551173..562102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS02830 (NST80_02830) amiC 552666..554159 (+) 1494 WP_014632819.1 ABC transporter permease Regulator
  NST80_RS02835 (NST80_02835) amiD 554159..555085 (+) 927 WP_002886846.1 oligopeptide ABC transporter permease OppC Regulator
  NST80_RS02840 (NST80_02840) amiE 555095..556180 (+) 1086 WP_013990226.1 ABC transporter ATP-binding protein Regulator
  NST80_RS02845 (NST80_02845) amiF 556173..557102 (+) 930 WP_014634820.1 ATP-binding cassette domain-containing protein Regulator
  NST80_RS02850 (NST80_02850) - 557152..557937 (-) 786 WP_183138127.1 ABC transporter permease -
  NST80_RS02855 (NST80_02855) - 557949..558647 (-) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  NST80_RS02860 (NST80_02860) - 558652..559029 (-) 378 WP_002884206.1 GntR family transcriptional regulator -
  NST80_RS02865 (NST80_02865) - 559211..560005 (+) 795 WP_013990229.1 HAD family hydrolase -
  NST80_RS02870 (NST80_02870) - 559998..560816 (+) 819 WP_183138128.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35020.08 Da        Isoelectric Point: 6.5822

>NTDB_id=986315 NST80_RS02845 WP_014634820.1 556173..557102(+) (amiF) [Streptococcus sp. FSL K6-1323]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQILNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=986315 NST80_RS02845 WP_014634820.1 556173..557102(+) (amiF) [Streptococcus sp. FSL K6-1323]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACTACTATCGGTCGTG
CCATTATTGGTCTGAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGGCACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTGACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAATTTTGAACCTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTACCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCGATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCTGTTGATAAACCAGAAATGGTTGAAGTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATTGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977

Multiple sequence alignment