Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MKY94_RS21110 Genome accession   NZ_CP152021
Coordinates   4116795..4117295 (-) Length   166 a.a.
NCBI ID   WP_144540265.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-2843     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4111795..4122295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY94_RS21090 (MKY94_21090) rplI 4112781..4113230 (-) 450 WP_144540261.1 50S ribosomal protein L9 -
  MKY94_RS21095 (MKY94_21095) - 4113227..4115203 (-) 1977 WP_151111906.1 DHH family phosphoesterase -
  MKY94_RS21100 (MKY94_21100) - 4115216..4116157 (-) 942 WP_144540263.1 DUF2232 domain-containing protein -
  MKY94_RS21105 (MKY94_21105) rpsR 4116512..4116748 (-) 237 WP_142540806.1 30S ribosomal protein S18 -
  MKY94_RS21110 (MKY94_21110) ssbA 4116795..4117295 (-) 501 WP_144540265.1 single-stranded DNA-binding protein Machinery gene
  MKY94_RS21115 (MKY94_21115) rpsF 4117337..4117627 (-) 291 WP_144540267.1 30S ribosomal protein S6 -
  MKY94_RS21120 (MKY94_21120) - 4117796..4118353 (+) 558 WP_342577777.1 DUF3267 domain-containing protein -
  MKY94_RS21125 (MKY94_21125) ychF 4118408..4119508 (-) 1101 WP_144540269.1 redox-regulated ATPase YchF -
  MKY94_RS21130 (MKY94_21130) - 4119594..4119794 (-) 201 WP_144540271.1 DUF951 domain-containing protein -
  MKY94_RS21135 (MKY94_21135) - 4119804..4120658 (-) 855 WP_144540273.1 mechanosensitive ion channel family protein -
  MKY94_RS21140 (MKY94_21140) yyaC 4120738..4121331 (+) 594 WP_144540275.1 spore protease YyaC -
  MKY94_RS21145 (MKY94_21145) - 4121293..4121991 (-) 699 WP_144540277.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18353.09 Da        Isoelectric Point: 4.7621

>NTDB_id=985297 MKY94_RS21110 WP_144540265.1 4116795..4117295(-) (ssbA) [Psychrobacillus sp. FSL K6-2843]
MINRVVLVGRLTKDPELRYTPSGVAMARFTLAVNRTFSNQQGEREADFINCVVWRKQAENTANFLKKGSLAGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRGSSGDRGQGGQSYGGGQQQNSYPTYQQNQPMNQQNYTRVDEDPFGNSSGPIEVS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=985297 MKY94_RS21110 WP_144540265.1 4116795..4117295(-) (ssbA) [Psychrobacillus sp. FSL K6-2843]
ATGATTAACCGTGTCGTATTAGTTGGAAGACTAACAAAAGATCCGGAACTTCGATATACGCCAAGTGGTGTTGCAATGGC
TAGATTTACACTTGCTGTAAATCGTACATTCTCTAACCAACAAGGCGAAAGAGAAGCTGATTTTATCAACTGTGTCGTTT
GGAGAAAACAAGCGGAAAACACAGCCAATTTCTTGAAAAAAGGAAGCTTGGCAGGTGTAGAAGGGCGTATTCAAACGGGT
AGTTATGAAGGACAAGATGGGAAACGCGTTTATACGACAGACGTTGTCGCAGACAGCGTTCAGTTCTTAGAACCACGCGG
TAGCTCTGGTGATCGTGGCCAAGGTGGACAATCATATGGCGGCGGACAACAACAGAACTCTTATCCGACATATCAGCAAA
ACCAACCAATGAATCAGCAAAACTATACACGTGTAGATGAAGATCCATTTGGAAATAGTAGTGGTCCGATTGAAGTATCT
GATGACGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.644

100

0.657
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.56
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

63.855

0.398
  ssb Neisseria meningitidis MC58

36.158

100

0.386
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.386
  ssb Glaesserella parasuis strain SC1401

34.831

100

0.373

Multiple sequence alignment