Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MKY09_RS08440 Genome accession   NZ_CP152020
Coordinates   1719043..1720746 (+) Length   567 a.a.
NCBI ID   WP_298472669.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL K6-4046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1714043..1725746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY09_RS08415 (MKY09_08415) xseB 1714344..1714565 (+) 222 WP_169358139.1 exodeoxyribonuclease VII small subunit -
  MKY09_RS08420 (MKY09_08420) - 1714555..1715439 (+) 885 WP_342568061.1 polyprenyl synthetase family protein -
  MKY09_RS08425 (MKY09_08425) dxs 1715529..1717424 (+) 1896 WP_251556901.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MKY09_RS08430 (MKY09_08430) - 1717421..1718239 (+) 819 WP_342568062.1 TlyA family RNA methyltransferase -
  MKY09_RS08435 (MKY09_08435) argR 1718338..1718787 (+) 450 WP_342568063.1 transcriptional regulator ArgR -
  MKY09_RS08440 (MKY09_08440) recN 1719043..1720746 (+) 1704 WP_298472669.1 DNA repair protein RecN Machinery gene
  MKY09_RS08445 (MKY09_08445) - 1720842..1721798 (+) 957 WP_169358144.1 SpoIVB peptidase S55 domain-containing protein -
  MKY09_RS08450 (MKY09_08450) spo0A 1722254..1723045 (+) 792 WP_342568064.1 sporulation transcription factor Spo0A -
  MKY09_RS08455 (MKY09_08455) - 1723444..1723986 (-) 543 WP_251556903.1 hypothetical protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64021.03 Da        Isoelectric Point: 4.9938

>NTDB_id=985241 MKY09_RS08440 WP_298472669.1 1719043..1720746(+) (recN) [Psychrobacillus sp. FSL K6-4046]
MLKELSIKNFAIIDELSVGFDEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGARKAELEGLFIITDPQHSVFKK
MFDVGIDVDDETIILRRDLNDSGKSVCRVNGKLVTIGILREIGASLIDIHGQHESQELMDDKAHIHLLDQFAGEDLKVVK
ENYKELFHKYKKWKKELATLTENEQQIAHKIDLYTFQVEEIAEAQLKSGEEELLQNEKKKLLNFHKVFDKMSNSYEAILG
ESKGLDYIGTAMSDLMDISDVDDNMKELSESVSSAFYILQDAAHQLKNELDEMEYDSNQLLEVEERLATIQTLKRKYGSS
IEEILEYKDQIQHSLSQLVNRDEQIQKMGEKIKQIEIDLQLEANELTVKRKIAAEKLSKAIMEQLKELYMEKATFSVMFH
EQSNQTYNEDGLDDLSFYISTNVGEPLKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AGIATNSQVLCISHLSQVAAMADQHLLIRKEVTGNRTYTLLEEITDNKRAEELSRMMSGTEITTTTLKHSKELLKIANER
KKILRNS

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=985241 MKY09_RS08440 WP_298472669.1 1719043..1720746(+) (recN) [Psychrobacillus sp. FSL K6-4046]
TTGTTAAAAGAACTTTCCATTAAAAACTTTGCTATTATAGACGAGCTATCAGTTGGCTTCGACGAAGGACTAACTGTATT
AACTGGTGAGACTGGTGCTGGTAAATCCATTATTATAGATGCAGTTCATTTACTCTGTGGAGGTAGAGGCTCACAGGAAT
TTATTCGACATGGAGCACGGAAAGCTGAACTGGAAGGATTATTCATCATAACAGATCCACAACATAGTGTTTTTAAGAAA
ATGTTTGACGTTGGTATAGATGTCGACGACGAAACTATTATTCTCCGTAGAGATTTAAATGATTCTGGAAAAAGTGTCTG
TAGAGTTAATGGAAAATTAGTTACTATAGGCATTCTAAGAGAGATTGGTGCTAGTTTAATAGATATTCATGGCCAACATG
AAAGCCAAGAACTTATGGACGACAAAGCTCATATTCATTTACTAGACCAGTTTGCTGGCGAAGACTTAAAGGTAGTAAAA
GAAAATTATAAAGAATTGTTCCATAAATATAAAAAATGGAAAAAAGAACTTGCGACATTAACGGAAAACGAACAACAAAT
AGCGCACAAAATAGATTTGTACACTTTTCAAGTAGAGGAAATAGCGGAAGCACAGTTGAAAAGTGGAGAAGAAGAATTGC
TCCAAAATGAAAAAAAGAAATTATTAAACTTTCATAAGGTGTTCGACAAGATGAGTAATTCCTATGAAGCTATTTTAGGA
GAATCTAAAGGATTAGATTATATAGGAACTGCAATGTCAGATTTAATGGATATATCCGATGTTGATGATAATATGAAGGA
GTTAAGCGAAAGCGTATCTTCTGCTTTTTATATATTACAGGATGCCGCCCACCAGCTTAAAAATGAGCTGGATGAGATGG
AATATGATAGCAATCAGTTGCTTGAGGTGGAAGAGAGACTTGCAACTATTCAAACGTTAAAGAGAAAATATGGCTCATCC
ATTGAAGAAATTTTAGAATACAAAGATCAAATTCAGCATAGCCTAAGCCAATTAGTCAATCGAGATGAACAGATTCAAAA
AATGGGTGAAAAAATAAAGCAAATTGAAATTGATCTCCAGCTAGAAGCAAATGAATTGACCGTAAAACGTAAAATTGCTG
CTGAAAAGTTAAGTAAAGCAATTATGGAGCAGCTTAAAGAGTTATATATGGAAAAAGCTACTTTTTCAGTTATGTTTCAC
GAGCAGTCTAACCAAACGTATAATGAAGATGGCTTAGATGACTTGTCATTTTACATTTCTACAAATGTGGGAGAGCCATT
AAAAGCATTAACGAAAATAGCGTCCGGAGGAGAACTTTCTCGTATGATGTTGGCCCTAAAAAGCATTTTTTCAAAACATC
AAGGGATTACTTCCATCATTTTCGATGAAGTAGATACAGGAGTTAGCGGACGTGTTGCTCAGGCCATAGCGGAGAAAATA
GCTGGCATTGCTACGAATTCTCAGGTTTTGTGCATTTCTCATCTTTCTCAGGTTGCAGCAATGGCAGATCAGCATTTGTT
AATCCGAAAAGAAGTGACTGGAAACAGAACATATACATTATTGGAGGAAATAACAGACAATAAACGAGCTGAGGAATTGA
GCCGAATGATGTCAGGTACCGAAATAACTACGACCACATTAAAACACTCCAAAGAATTATTAAAAATTGCAAATGAACGT
AAAAAAATATTAAGAAACTCCTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.091

100

0.527

Multiple sequence alignment