Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NST24_RS11390 Genome accession   NZ_CP151977
Coordinates   2231537..2233270 (-) Length   577 a.a.
NCBI ID   WP_342461789.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2226537..2238270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST24_RS11375 (NST24_11375) - 2227424..2228524 (-) 1101 WP_024718885.1 Rap family tetratricopeptide repeat protein -
  NST24_RS11380 (NST24_11380) spo0A 2228974..2229777 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  NST24_RS11385 (NST24_11385) spoIVB 2230061..2231338 (-) 1278 WP_008342225.1 SpoIVB peptidase -
  NST24_RS11390 (NST24_11390) recN 2231537..2233270 (-) 1734 WP_342461789.1 DNA repair protein RecN Machinery gene
  NST24_RS11395 (NST24_11395) argR 2233305..2233754 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  NST24_RS11400 (NST24_11400) - 2233916..2234770 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  NST24_RS11405 (NST24_11405) dxs 2234767..2236668 (-) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NST24_RS11410 (NST24_11410) - 2236820..2237710 (-) 891 WP_041091760.1 polyprenyl synthetase family protein -
  NST24_RS11415 (NST24_11415) - 2237700..2237960 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64571.46 Da        Isoelectric Point: 4.7444

>NTDB_id=983032 NST24_RS11390 WP_342461789.1 2231537..2233270(-) (recN) [Bacillus sp. FSL R5-0286]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYGAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=983032 NST24_RS11390 WP_342461789.1 2231537..2233270(-) (recN) [Bacillus sp. FSL R5-0286]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGT
GAGGAGCAAGGCATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAGGATGAAAATCATTTGCATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAAGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCGCTTCAAAACGCGTATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAATGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGGCTAAATGAAATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGGGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAATGGCATAGATCA
AGCTCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGT
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTTGCAGCAATGGCTGATACACATCTTTTTATTTCAAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTCAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756

Multiple sequence alignment