Detailed information NTG0982868

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: NSS78_RS16885
• Genome accession: NZ_CP151974
• Coordinates: 3272042..3272728 (-)
• Length: 228 a.a.
• NCBI ID: WP_212045588.1
• Uniprot ID: -
• Organism: Bacillus sp. FSL W8-0920
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3267042..3277728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NSS78_RS16850 (NSS78_16850)	fliW	3267175..3267609 (-)	435	WP_044139341.1	flagellar assembly protein FliW	-
NSS78_RS16855 (NSS78_16855)	-	3267638..3268216 (-)	579	WP_003213106.1	DUF6470 family protein	-
NSS78_RS16860 (NSS78_16860)	flgL	3268265..3269176 (-)	912	WP_137054345.1	flagellar hook-associated protein FlgL	-
NSS78_RS16865 (NSS78_16865)	flgK	3269186..3270706 (-)	1521	WP_003213544.1	flagellar hook-associated protein FlgK	-
NSS78_RS16870 (NSS78_16870)	-	3270722..3271204 (-)	483	WP_050944342.1	flagellar protein FlgN	-
NSS78_RS16875 (NSS78_16875)	flgM	3271223..3271486 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
NSS78_RS16880 (NSS78_16880)	-	3271566..3271985 (-)	420	WP_003212865.1	TIGR03826 family flagellar region protein	-
NSS78_RS16885 (NSS78_16885)	comFC	3272042..3272728 (-)	687	WP_212045588.1	ComF family protein	Machinery gene
NSS78_RS16890 (NSS78_16890)	-	3272725..3273018 (-)	294	WP_050944343.1	competence protein ComFB	-
NSS78_RS16895 (NSS78_16895)	comFA	3273085..3274212 (-)	1128	WP_335353006.1	DEAD/DEAH box helicase	Machinery gene
NSS78_RS16900 (NSS78_16900)	-	3274584..3275426 (-)	843	WP_003213402.1	DegV family protein	-
NSS78_RS16905 (NSS78_16905)	degU	3275644..3276333 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
NSS78_RS16910 (NSS78_16910)	degS	3276398..3277573 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26054.55 Da
• Isoelectric Point: 9.8858

>NTDB_id=982868 NSS78_RS16885 WP_212045588.1 3272042..3272728(-) (comFC) [Bacillus sp. FSL W8-0920]
MICLICEGHFVASFTWKSLLLLNDDRLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSMWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVRAVFKRSFSMKEPVLIPIPLSKERLKERGFNQSVILASLIGEPILQPLVKIH
QSKQSKKKKNERLYQKGMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=982868 NSS78_RS16885 WP_212045588.1 3272042..3272728(-) (comFC) [Bacillus sp. FSL W8-0920]
TTGATCTGCCTCATTTGTGAGGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCCTGCGGGAGAGCACAGTCGAACGATC
AATTATGTCAAGACTGTTCCATGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCGAGCAGTATTTAAGCGCTCTTTTTCAATGAAAGAACCTGTCCTGATCCCGATTCCTTTAAGTAAAGAAAGACTAA
AGGAAAGAGGGTTTAATCAGTCCGTCATACTAGCTTCCTTGATTGGTGAGCCGATCCTTCAGCCGCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTATATCAAAAAGGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (163-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395