Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE38_RS08320 Genome accession   NZ_CP151944
Coordinates   1651181..1651960 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. EU63     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1646181..1656960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS08300 (NYE38_08300) trmFO 1646868..1648175 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NYE38_RS08305 (NYE38_08305) xerC 1648245..1649162 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  NYE38_RS08310 (NYE38_08310) hslV 1649178..1649723 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  NYE38_RS08315 (NYE38_08315) hslU 1649731..1651143 (+) 1413 WP_257986734.1 HslU--HslV peptidase ATPase subunit -
  NYE38_RS08320 (NYE38_08320) codY 1651181..1651960 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE38_RS08325 (NYE38_08325) flgB 1652314..1652703 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  NYE38_RS08330 (NYE38_08330) flgC 1652703..1653155 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  NYE38_RS08335 (NYE38_08335) fliE 1653166..1653486 (+) 321 WP_017417776.1 flagellar hook-basal body complex protein FliE -
  NYE38_RS08340 (NYE38_08340) fliF 1653529..1655139 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE38_RS08345 (NYE38_08345) fliG 1655152..1656168 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  NYE38_RS08350 (NYE38_08350) fliH 1656161..1656916 (+) 756 WP_063636636.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=981595 NYE38_RS08320 WP_003154263.1 1651181..1651960(+) (codY) [Bacillus sp. EU63]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=981595 NYE38_RS08320 WP_003154263.1 1651181..1651960(+) (codY) [Bacillus sp. EU63]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment