Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   ABXG87_RS09380 Genome accession   NZ_AP031488
Coordinates   1981219..1981536 (-) Length   105 a.a.
NCBI ID   WP_021144683.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1976219..1986536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS09350 (Ssa13956_17800) - 1976553..1977215 (-) 663 WP_049529267.1 type II CAAX endopeptidase family protein -
  ABXG87_RS09355 (Ssa13956_17810) - 1977328..1977774 (-) 447 WP_353551574.1 CAAX protease -
  ABXG87_RS09360 (Ssa13956_17820) - 1977852..1978508 (-) 657 WP_353551575.1 type II CAAX endopeptidase family protein -
  ABXG87_RS09365 (Ssa13956_17830) - 1978520..1978717 (-) 198 WP_049553950.1 helix-turn-helix transcriptional regulator -
  ABXG87_RS09370 (Ssa13956_17840) - 1978968..1980161 (-) 1194 WP_070838927.1 acetate kinase -
  ABXG87_RS09375 (Ssa13956_17850) comGH 1980218..1981174 (-) 957 WP_353551577.1 class I SAM-dependent methyltransferase Machinery gene
  ABXG87_RS09380 (Ssa13956_17860) comGG 1981219..1981536 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABXG87_RS09385 (Ssa13956_17870) comGF 1981514..1981951 (-) 438 WP_045769383.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABXG87_RS09390 (Ssa13956_17880) comGE 1981938..1982168 (-) 231 WP_045769382.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABXG87_RS09395 (Ssa13956_17890) comGD 1982200..1982628 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABXG87_RS09400 (Ssa13956_17900) comGC 1982588..1982902 (-) 315 WP_171963490.1 competence type IV pilus major pilin ComGC Machinery gene
  ABXG87_RS09405 (Ssa13956_17910) comGB 1982911..1984011 (-) 1101 WP_118185904.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABXG87_RS09410 (Ssa13956_17920) comGA 1983893..1984834 (-) 942 WP_013991268.1 competence type IV pilus ATPase ComGA Machinery gene
  ABXG87_RS09415 (Ssa13956_17930) - 1984914..1985276 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11926.01 Da        Isoelectric Point: 10.5034

>NTDB_id=98142 ABXG87_RS09380 WP_021144683.1 1981219..1981536(-) (comGG) [Streptococcus salivarius strain NBRC 13956]
MLLKKQVRGGVLLYALFMAGIFTLLLHVYLERVVASSRQNQAQMISSQSRLMAEMTMDLADKEAGAFSFSQGTTTYEVKD
KQVIVRVASKGQIKTYRYVKKQEQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=98142 ABXG87_RS09380 WP_021144683.1 1981219..1981536(-) (comGG) [Streptococcus salivarius strain NBRC 13956]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTATGCTCTTTTTATGGCTGGCATTTTCACACTTCTTCTGCA
TGTTTATTTGGAGCGGGTGGTTGCTAGCTCTAGACAGAACCAAGCGCAAATGATCTCCAGTCAGAGTCGTCTCATGGCAG
AGATGACCATGGACTTGGCGGACAAGGAAGCAGGTGCTTTTAGTTTCTCTCAGGGAACTACGACTTATGAGGTTAAGGAC
AAACAAGTGATTGTTAGAGTTGCCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAGCAGGAGCAGAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

43.396

100

0.438
  comGG Streptococcus mutans UA159

43.396

100

0.438

Multiple sequence alignment