Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AAFA31_RS27030 Genome accession   NZ_CP151768
Coordinates   5612369..5613889 (+) Length   506 a.a.
NCBI ID   WP_004097466.1    Uniprot ID   A0A7H5AFJ0
Organism   Klebsiella michiganensis strain 2024HQ-00017     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5607369..5618889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA31_RS27010 (AAFA31_27015) - 5608933..5609862 (-) 930 WP_004097473.1 branched-chain amino acid transaminase -
  AAFA31_RS27015 (AAFA31_27020) ilvM 5609879..5610136 (-) 258 WP_004097471.1 acetolactate synthase 2 small subunit -
  AAFA31_RS27020 (AAFA31_27025) ilvG 5610133..5611779 (-) 1647 WP_032722005.1 acetolactate synthase 2 catalytic subunit -
  AAFA31_RS27025 (AAFA31_27030) ilvL 5611920..5612018 (-) 99 WP_001311244.1 ilv operon leader peptide -
  AAFA31_RS27030 (AAFA31_27035) comM 5612369..5613889 (+) 1521 WP_004097466.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AAFA31_RS27035 (AAFA31_27040) - 5613913..5614251 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  AAFA31_RS27040 (AAFA31_27045) hdfR 5614370..5615191 (+) 822 WP_004097454.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55253.72 Da        Isoelectric Point: 8.3579

>NTDB_id=980803 AAFA31_RS27030 WP_004097466.1 5612369..5613889(+) (comM) [Klebsiella michiganensis strain 2024HQ-00017]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRRIVVSNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRHTLANPLPEGEYSDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVDSRHAMKNWRRRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHKDDAVWLEQTLIQLGLSIRAWQRLIKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=980803 AAFA31_RS27030 WP_004097466.1 5612369..5613889(+) (comM) [Klebsiella michiganensis strain 2024HQ-00017]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGTGCCCCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGACTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGTTACGCTTATCCGGCGAAAAAAATCACCATCAATCTGGCCCCGGCCGATCTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAAGGCTCCCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGTGCCATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAGGATTGTTGTCTCTAATGAGAATTCTCCAGAGGTGGGGTTAATCGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTAGAAGGTCGACATACCCTGGCTAACCCCCTTCCAGAAGGAGAATATTCGGATGAAACATC
GGTTGATCTGCGTGATGTTATTGGCCAGCGGCAGGGGAAACGAGCGCTGGAAATCATCGCTGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTACTGCCGCCGCTGAGTAATCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCGATTCCAGGCATGCCATGAAAAATTGGCGCCGCAGGCCCTTTCG
TGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGCGGAGGCTCAATTCCGGTACCGGGAGAGATCTCCCTTGCCC
ATAACGGAGTCCTGTTCCTGGATGAGCTGCCTGAATTCGAACGCAGGGTGCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCACGCACGCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCGATGAATCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCTTCACCGGAACAGACGCTACGCTACCTGGGTCGTTTATCCGGCC
CGTTTCTTGACCGATTCGATCTCTCCCTGGAGATCCCGCTTCCGCCGCCGGGGGTGCTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAACGCGCA
TTTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATAAAGATGACGCTGTCTGGCTGGAGCAGACGCTAATACAGC
TCGGGCTTTCAATCCGCGCCTGGCAGCGCCTGATTAAAGTGTCCCGAACTATTGCCGATATTGAGGCAGTCGAACGCATC
GAACGCCATCATTTGCAGGAGGCTCTCGGCTACCGGGCAATAGACAGAATGCTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5AFJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Haemophilus influenzae Rd KW20

58.904

100

0.595
  comM Glaesserella parasuis strain SC1401

59.172

100

0.593
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.441

Multiple sequence alignment