Detailed information    

insolico Bioinformatically predicted

Overview

Name   stkP/pknB   Type   Regulator
Locus tag   ABXG87_RS02810 Genome accession   NZ_AP031488
Coordinates   553755..555635 (+) Length   626 a.a.
NCBI ID   WP_353551820.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   activate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 548755..560635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02795 (Ssa13956_04930) fmt 550727..551662 (+) 936 WP_045001578.1 methionyl-tRNA formyltransferase -
  ABXG87_RS02800 (Ssa13956_04940) rsmB 551652..552974 (+) 1323 WP_045002041.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ABXG87_RS02805 (Ssa13956_04950) - 553018..553755 (+) 738 WP_002886859.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  ABXG87_RS02810 (Ssa13956_04960) stkP/pknB 553755..555635 (+) 1881 WP_353551820.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  ABXG87_RS02815 (Ssa13956_04970) - 555781..556539 (+) 759 WP_353551822.1 ion channel -
  ABXG87_RS02820 (Ssa13956_04980) liaF 556702..557400 (+) 699 WP_353551824.1 cell wall-active antibiotics response protein LiaF -
  ABXG87_RS02825 (Ssa13956_04990) - 557397..558407 (+) 1011 WP_002891418.1 sensor histidine kinase -
  ABXG87_RS02830 (Ssa13956_05000) vraR 558397..559041 (+) 645 WP_002891417.1 response regulator transcription factor Regulator
  ABXG87_RS02845 (Ssa13956_05010) rimM 559736..560254 (+) 519 WP_353551826.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 626 a.a.        Molecular weight: 68244.09 Da        Isoelectric Point: 7.6981

>NTDB_id=98080 ABXG87_RS02810 WP_353551820.1 553755..555635(+) (stkP/pknB) [Streptococcus salivarius strain NBRC 13956]
MIQVGKLFAGRYRILKAIGRGGMADVYLANDLILDNEKVAIKVLRTNYQTDQVAVARFQREARAMAELSHPNIVAIRDIG
EEDGQQFLVMEYVDGSDLKKYIQDHAPLSNQDVVRIMGEILSAMTLAHQKGIIHRDLKPQNVLLTKDGRAKVTDFGIAVA
FAETSLTQTNSMLGSVHYLSPEQARGSKATIQSDIYAMGIMLFEMLTGRIPYDGDSAVTIALQHFQKPLPSILAENHNVP
QALENVVIRATAKKLENRYNSTLEMSRDLVTSLYPSHSRDAKVVFDDMTDTKTLPKVTPVPSVSSEKKATAKSSESKQAV
SKQPRKNSTLVKNKKKKKKKSFFSTSLKVFLGLVFIGIIIFAYLVFTNPDSTQVPNVVGQELSTAQTKIEGAGFKVGEVK
EMEDDSVDTGKVVKTDPTAGTTRKEGSSIDIYVSSGSKGFALKDYKGKNYKDAIEDLTSNYGVSEDQIDIQHVEDDSAEE
GEILSQSPGKNKSFNPKDSKAKIKFRVATPKTVTMPDVTGLTVSTAVQTLNRKSILSSSIEYHDYNTGAKLDKDKVPSST
EVLYQDPQAGISVDGTVILYVSVATASSSLQSSSSSTTHSSSTSSSTESTSSSTETPTEATHTDQQ

Nucleotide


Download         Length: 1881 bp        

>NTDB_id=98080 ABXG87_RS02810 WP_353551820.1 553755..555635(+) (stkP/pknB) [Streptococcus salivarius strain NBRC 13956]
ATGATCCAAGTTGGCAAATTGTTTGCTGGACGTTATCGAATCCTTAAAGCTATCGGACGTGGTGGTATGGCGGATGTTTA
TCTGGCTAATGACCTGATCTTGGATAATGAGAAAGTGGCCATTAAGGTGCTTCGTACTAATTATCAAACCGATCAGGTAG
CTGTGGCACGTTTCCAGCGTGAAGCACGTGCCATGGCAGAACTCAGTCATCCCAATATCGTTGCAATCCGAGACATTGGC
GAAGAAGACGGCCAGCAGTTCTTGGTGATGGAGTACGTGGATGGTTCGGACTTGAAGAAATATATTCAAGACCATGCGCC
ACTTTCTAACCAAGATGTTGTGCGTATTATGGGAGAGATTCTTTCTGCCATGACTCTTGCCCATCAAAAGGGTATTATCC
ACCGTGACCTTAAGCCACAAAACGTTCTTTTAACTAAAGACGGTAGGGCCAAAGTTACAGACTTCGGGATTGCGGTTGCC
TTTGCAGAGACTAGTTTGACTCAAACCAATTCTATGTTGGGTTCTGTCCACTACCTCTCACCAGAGCAGGCGCGTGGATC
TAAAGCAACTATCCAAAGTGATATCTATGCTATGGGTATCATGCTCTTTGAAATGTTGACAGGGCGTATTCCATATGATG
GTGATAGTGCAGTTACCATCGCTCTTCAGCATTTCCAAAAACCATTACCATCAATCTTGGCTGAGAATCATAATGTTCCT
CAGGCATTGGAAAATGTGGTTATTCGAGCGACAGCTAAAAAGCTTGAAAATCGTTATAACAGTACTTTGGAAATGAGCCG
AGATTTAGTAACTAGCTTATATCCTAGCCATAGCCGTGATGCTAAGGTAGTCTTTGATGACATGACGGATACTAAGACTT
TGCCTAAGGTTACTCCAGTTCCGTCAGTAAGCTCTGAGAAAAAGGCAACTGCCAAGTCGTCAGAGTCAAAACAAGCTGTA
AGTAAGCAACCAAGGAAAAATTCAACACTAGTTAAGAATAAAAAGAAGAAAAAAAAGAAAAGCTTTTTCTCGACATCACT
CAAGGTATTCCTGGGGTTGGTCTTTATCGGGATTATCATTTTTGCCTATTTGGTATTTACCAACCCTGATAGTACTCAGG
TGCCTAACGTGGTCGGTCAAGAGTTGTCCACAGCTCAGACTAAAATTGAGGGTGCTGGATTTAAGGTAGGAGAAGTTAAG
GAAATGGAAGATGACTCTGTCGATACAGGCAAGGTCGTAAAGACTGATCCTACAGCTGGAACCACACGAAAAGAAGGATC
AAGTATTGATATCTATGTTTCTTCTGGTAGTAAAGGTTTCGCTTTGAAAGACTACAAGGGTAAAAACTATAAGGATGCCA
TTGAGGATTTAACTTCGAATTATGGCGTTTCTGAGGACCAAATTGATATTCAGCATGTCGAAGACGACAGTGCTGAAGAG
GGAGAAATCCTATCTCAAAGTCCAGGTAAAAACAAGTCTTTCAATCCTAAGGATAGTAAGGCCAAGATTAAGTTCCGTGT
GGCAACTCCTAAGACAGTTACCATGCCTGATGTGACTGGTTTGACGGTTTCAACAGCGGTTCAAACTTTGAATCGTAAGA
GTATCTTAAGTAGTAGCATCGAGTATCATGACTATAATACTGGTGCTAAGTTAGACAAGGATAAGGTTCCTAGCAGCACA
GAGGTCCTTTATCAAGATCCACAAGCTGGTATAAGCGTTGATGGTACAGTGATTCTCTATGTTTCGGTTGCAACAGCAAG
TTCAAGCCTACAGTCAAGCTCAAGCAGTACGACACATTCGTCATCGACGAGCTCAAGTACTGAAAGCACAAGCTCTAGTA
CTGAAACACCGACAGAGGCTACTCACACAGACCAACAATAG

Domains

Predicted by InterProScan.

PASTA domain (PASTA)

(443-507)

PASTA domain (PASTA)

(373-434)

PASTA domain (PASTA)

(513-582)

Protein kinase domain (Pkinase)

(12-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP/pknB Streptococcus salivarius strain HSISS4

92.663

100

0.928
  pknB Streptococcus mutans UA159

65.809

86.901

0.572
  stkP Streptococcus pneumoniae TIGR4

57.863

79.233

0.458
  stkP Streptococcus pneumoniae D39

57.661

79.233

0.457
  stkP Streptococcus pneumoniae R6

57.661

79.233

0.457
  stkP Streptococcus pneumoniae Rx1

57.46

79.233

0.455

Multiple sequence alignment