Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AADZ70_RS12425 Genome accession   NZ_CP151679
Coordinates   2479173..2480558 (-) Length   461 a.a.
NCBI ID   WP_342007115.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2474173..2485558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS12390 (AADZ70_12390) flgL 2474347..2475264 (-) 918 WP_016937776.1 flagellar hook-associated protein FlgL -
  AADZ70_RS12395 (AADZ70_12395) flgK 2475277..2476794 (-) 1518 WP_049627498.1 flagellar hook-associated protein FlgK -
  AADZ70_RS12400 (AADZ70_12400) - 2476810..2477292 (-) 483 WP_045926612.1 flagellar protein FlgN -
  AADZ70_RS12405 (AADZ70_12405) flgM 2477307..2477573 (-) 267 WP_016937773.1 flagellar biosynthesis anti-sigma factor FlgM -
  AADZ70_RS12410 (AADZ70_12410) - 2477643..2478062 (-) 420 WP_016937772.1 TIGR03826 family flagellar region protein -
  AADZ70_RS12415 (AADZ70_12415) comFC 2478136..2478645 (-) 510 WP_342007114.1 phosphoribosyltransferase family protein Machinery gene
  AADZ70_RS12420 (AADZ70_12420) - 2478831..2479115 (-) 285 WP_016937770.1 competence protein ComFB -
  AADZ70_RS12425 (AADZ70_12425) comFA 2479173..2480558 (-) 1386 WP_342007115.1 DEAD/DEAH box helicase Machinery gene
  AADZ70_RS12430 (AADZ70_12430) - 2480666..2481514 (-) 849 WP_342007116.1 DegV family protein -
  AADZ70_RS12435 (AADZ70_12435) degU 2481612..2482301 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AADZ70_RS12440 (AADZ70_12440) degS 2482378..2483541 (-) 1164 WP_016937767.1 two-component sensor histidine kinase DegS Regulator
  AADZ70_RS12445 (AADZ70_12445) - 2483764..2484411 (+) 648 WP_045927194.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52326.70 Da        Isoelectric Point: 10.1376

>NTDB_id=979704 AADZ70_RS12425 WP_342007115.1 2479173..2480558(-) (comFA) [Bacillus sp. YBsi01]
MSEDASEFSEVRDFFYGRHLLRSEIPFSDQRINPFIEKEYIKAEPSVIRRKNRYVCRRCGQSDQSCFAAFWAPSAKRHIT
YCRACVVMGRADELTSLYSWNQTSESGWAPVKLAWEGTLTAGQKQAAGALIKAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFENVEVSALYGGSEDKGSLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKNNSALVYVTATPSDALKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPHSVTDWV
RQKLQSRLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=979704 AADZ70_RS12425 WP_342007115.1 2479173..2480558(-) (comFA) [Bacillus sp. YBsi01]
ATGTCCGAAGATGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCAGGCATTTGTTGAGATCTGAGATACCGTT
TTCAGATCAGCGTATCAATCCTTTTATAGAAAAAGAATATATAAAGGCCGAGCCGTCTGTCATCCGCAGGAAAAACCGTT
ACGTCTGCCGCCGATGCGGCCAGTCTGACCAATCCTGCTTTGCCGCATTCTGGGCGCCTTCTGCCAAAAGACATATTACC
TATTGCCGTGCCTGTGTCGTCATGGGAAGGGCTGATGAACTGACGTCATTATATTCTTGGAATCAAACCTCAGAAAGCGG
CTGGGCGCCTGTAAAGCTTGCTTGGGAAGGAACACTGACAGCCGGACAGAAGCAGGCGGCCGGCGCGCTTATAAAAGCGA
TAAAAGAGAAACAAGAGCTGTTAGTGTGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCACTGAATCACGGATTGCGGGTCTGTGTCGCGACTCCGCGTACAGATGTCGTGCTTGAACTTCTGCCGAGACTGAAAAA
AGCATTTGAGAATGTTGAAGTTTCAGCTCTGTACGGCGGCAGTGAAGACAAAGGCAGTTTAACTCCGCTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTATCGTGATATTTTTGATGTCATGATAATAGATGAAGTGGATGCATTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAACAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CGCATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGAAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCACACTCAGTAACGGATTGGGTC
CGTCAAAAACTTCAATCACGGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCTAAAGTTCAGACATGTGTCCTCGGC
GCGGAAGCACCTATCTTTACTGAGAGCGCACTCGTGCAGATCGCAGGCAGAACGGGAAGGCACTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(119-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.904

90.239

0.36

Multiple sequence alignment