Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   R8619_RS09765 Genome accession   NZ_AP026918
Coordinates   1875952..1876968 (-) Length   338 a.a.
NCBI ID   WP_073177425.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1870952..1881968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS09720 - 1871029..1871160 (-) 132 WP_000768904.1 hypothetical protein -
  R8619_RS09725 (PC0009_18820) - 1871161..1872351 (-) 1191 WP_000167752.1 acetate kinase -
  R8619_RS09730 (PC0009_18830) comYH 1872402..1873355 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  R8619_RS09735 - 1873416..1874010 (-) 595 Protein_1890 class I SAM-dependent methyltransferase -
  R8619_RS09740 (PC0009_18860) comGG/cglG 1874147..1874560 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8619_RS09745 (PC0009_18870) comGF/cglF 1874538..1874999 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8619_RS09750 (PC0009_18880) comGE/cglE 1874962..1875264 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8619_RS09755 (PC0009_18890) comGD/cglD 1875227..1875631 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8619_RS09760 (PC0009_18900) comGC/cglC 1875624..1875950 (-) 327 WP_050260822.1 comG operon protein ComGC Machinery gene
  R8619_RS09765 (PC0009_18910) comGB/cglB 1875952..1876968 (-) 1017 WP_073177425.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8619_RS09770 (PC0009_18920) comGA/cglA/cilD 1876916..1877857 (-) 942 WP_000249559.1 competence type IV pilus ATPase ComGA Machinery gene
  R8619_RS09775 (PC0009_18930) - 1877933..1878298 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8619_RS09780 (PC0009_18940) - 1878565..1879820 (+) 1256 WP_370657740.1 ISL3 family transposase -
  R8619_RS09785 (PC0009_18950) - 1879869..1880927 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38420.45 Da        Isoelectric Point: 9.4802

>NTDB_id=97832 R8619_RS09765 WP_073177425.1 1875952..1876968(-) (comGB/cglB) [Streptococcus pneumoniae strain PZ900700009]
MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVIQMRAGLSQGKSFSEMMESLGCSSTI
VTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIF
LGMVGLVSVLALLALTFYKRSSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEI
GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=97832 R8619_RS09765 WP_073177425.1 1875952..1876968(-) (comGB/cglB) [Streptococcus pneumoniae strain PZ900700009]
ATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAAGCAAAAAAATATCATCACCCTATTTAA
CAATCTCTTTTCTAGCGGTTTTCATCTGGTGGAGACTATCTCCTTTTTAGATAGGAGTGCTTTGTTGGACAAGCAGTGTG
TGATCCAGATGCGTGCGGGCTTGTCTCAAGGGAAATCATTCTCAGAAATGATGGAAAGTTTGGGATGTTCAAGTACCATT
GTCACTCAGTTATCCCTAGCCGAAGTTCATGGAAATCTCCACCTGAGTTTGGGAAAGATAGAAGAATATCTGGACAATCT
GGCTAAGGTCAAGAAAAAATTAATTGAAGTAGCGACCTATCCTTTGATTTTGCTGGGTTTTCTTCTCTTAATTATGCTGG
GGCTACGGAATTACCTGCTCCCACAACTGGATAGTAGCAATATTGCCACCCAAATTATCGGTAATCTGCCCCAAATTTTT
CTAGGCATGGTAGGGCTTGTTTCCGTGCTTGCCCTTTTAGCACTAACTTTTTATAAAAGAAGTTCTAAGATGAGTGTCTT
TTCTATCTTAGCACGCCTTCCCTTTATTGGAATCTTTGTGCAGACCTACTTGACAGCCTATTATGCACGTGAATGGGGGA
ATATGATTTCACAGGGAATGGAGCTGACGCAGATTTTTCAAATGATGCAGGAACAAGGTTCCCAGCTCTTTAAAGAAATC
GGTCAAGATCTGGCTCAAACCCTGAAAAATGGCCGTGAATTTTCTCAGACGATAGGAACCTATCCTTTCTTTAGGAAGGA
ATTGAGTCTCATCATAGAGTATGGGGAAGTTAAGTCCAAGCTGGGTAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAATTTGGTGCAGCCACTGGTTTTTATCTTTGTGGCACTGATTATCGTT
TTACTTTATGCGGCAATGCTCATGCCCATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus pneumoniae Rx1

98.817

100

0.988
  comGB/cglB Streptococcus pneumoniae D39

98.817

100

0.988
  comGB/cglB Streptococcus pneumoniae R6

98.817

100

0.988
  comGB/cglB Streptococcus pneumoniae TIGR4

98.817

100

0.988
  comGB/cglB Streptococcus mitis SK321

94.97

100

0.95
  comGB/cglB Streptococcus mitis NCTC 12261

94.675

100

0.947
  comYB Streptococcus gordonii str. Challis substr. CH1

71.131

99.408

0.707
  comYB Streptococcus mutans UA140

57.862

94.083

0.544
  comYB Streptococcus mutans UA159

57.862

94.083

0.544
  comGB Lactococcus lactis subsp. cremoris KW2

50.898

98.817

0.503

Multiple sequence alignment