Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   R8775_RS02675 Genome accession   NZ_AP026915
Coordinates   506823..506987 (-) Length   54 a.a.
NCBI ID   WP_306420852.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700005     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 501823..511987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8775_RS02645 (PC0005_05150) - 502155..502484 (-) 330 WP_000132572.1 hypothetical protein -
  R8775_RS02650 (PC0005_05160) - 502761..503099 (+) 339 WP_044792896.1 LytTR family DNA-binding domain-containing protein -
  R8775_RS02655 (PC0005_05170) comE/blpR 503104..503841 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  R8775_RS02660 (PC0005_05180) - 503855..505195 (+) 1341 WP_001099893.1 sensor histidine kinase -
  R8775_RS02665 (PC0005_05190) blpC 505239..505394 (-) 156 WP_000358811.1 quorum-sensing system pheromone BlpC -
  R8775_RS02670 (PC0005_05200) - 505451..506812 (-) 1362 WP_050233594.1 bacteriocin secretion accessory protein -
  R8775_RS02675 (PC0005_05210) comA/nlmT 506823..506987 (-) 165 WP_306420852.1 hypothetical protein Regulator
  R8775_RS02680 (PC0005_05220) blpA 507197..508498 (-) 1302 Protein_529 peptide cleavage/export ABC transporter BlpA -
  R8775_RS02685 (PC0005_05230) comA/nlmT 508392..508979 (-) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  R8775_RS02690 (PC0005_05240) blpI 509261..509458 (+) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  R8775_RS02695 (PC0005_05260) blpJ 509925..510194 (+) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  R8775_RS02700 (PC0005_05270) blpU 510263..510493 (+) 231 WP_050243503.1 bacteriocin-like peptide BlpU -
  R8775_RS02705 - 510496..510615 (+) 120 WP_050233614.1 PncF family bacteriocin immunity protein -
  R8775_RS02710 (PC0005_05280) - 510912..511076 (+) 165 WP_000727118.1 hypothetical protein -
  R8775_RS02715 (PC0005_05290) - 511073..511476 (+) 404 Protein_536 immunity protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6235.24 Da        Isoelectric Point: 8.7682

>NTDB_id=97552 R8775_RS02675 WP_306420852.1 506823..506987(-) (comA/nlmT) [Streptococcus pneumoniae strain PZ900700005]
MSLTDKTILFVAHRLSIAERTNRVIVLDQGKIIEVGSHQELMQAQGFYHHLFNK

Nucleotide


Download         Length: 165 bp        

>NTDB_id=97552 R8775_RS02675 WP_306420852.1 506823..506987(-) (comA/nlmT) [Streptococcus pneumoniae strain PZ900700005]
ATGTCCCTAACTGATAAAACCATTCTCTTTGTAGCCCATCGTCTCAGTATAGCCGAACGAACTAACCGTGTCATTGTTCT
TGACCAGGGGAAAATCATTGAAGTTGGTAGTCACCAAGAGTTAATGCAAGCGCAAGGATTCTACCATCATCTATTCAATA
AATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

64.151

98.148

0.63
  comA Streptococcus gordonii str. Challis substr. CH1

67.347

90.741

0.611
  comA Streptococcus mitis NCTC 12261

63.265

90.741

0.574
  comA Streptococcus pneumoniae TIGR4

63.265

90.741

0.574
  comA Streptococcus pneumoniae Rx1

63.265

90.741

0.574
  comA Streptococcus pneumoniae D39

63.265

90.741

0.574
  comA Streptococcus pneumoniae R6

63.265

90.741

0.574
  comA Streptococcus mitis SK321

61.224

90.741

0.556
  rcrQ Streptococcus mutans UA159

43.75

88.889

0.389

Multiple sequence alignment