Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR25_RS05710 | Genome accession | NZ_CP151146 |
| Coordinates | 1148651..1149121 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934768.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BSN152 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1138042..1180452 | 1148651..1149121 | within | 0 |
Gene organization within MGE regions
Location: 1138042..1180452
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR25_RS05630 (UXR25_05630) | - | 1138042..1139427 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| UXR25_RS05635 (UXR25_05635) | - | 1139634..1140314 (-) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| UXR25_RS05640 (UXR25_05640) | - | 1140350..1141069 (-) | 720 | WP_000358220.1 | XRE family transcriptional regulator | - |
| UXR25_RS05645 (UXR25_05645) | - | 1141211..1141429 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| UXR25_RS05650 (UXR25_05650) | - | 1141444..1141752 (+) | 309 | WP_001153965.1 | hypothetical protein | - |
| UXR25_RS05655 (UXR25_05655) | - | 1141909..1142697 (+) | 789 | WP_001148571.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR25_RS05660 (UXR25_05660) | - | 1142714..1142908 (+) | 195 | WP_000390105.1 | hypothetical protein | - |
| UXR25_RS05665 (UXR25_05665) | - | 1142962..1143705 (+) | 744 | WP_001572437.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR25_RS05670 (UXR25_05670) | - | 1143881..1144111 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| UXR25_RS05675 (UXR25_05675) | - | 1144161..1144298 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| UXR25_RS05680 (UXR25_05680) | - | 1144291..1144452 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| UXR25_RS05685 (UXR25_05685) | - | 1144546..1144806 (+) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| UXR25_RS05690 (UXR25_05690) | - | 1144815..1145078 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXR25_RS05695 (UXR25_05695) | - | 1145087..1147030 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| UXR25_RS05700 (UXR25_05700) | - | 1147032..1147952 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| UXR25_RS05705 (UXR25_05705) | - | 1148033..1148650 (+) | 618 | WP_071890040.1 | MBL fold metallo-hydrolase | - |
| UXR25_RS05710 (UXR25_05710) | ssbA | 1148651..1149121 (+) | 471 | WP_000934768.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR25_RS05715 (UXR25_05715) | - | 1149151..1150038 (+) | 888 | WP_000148306.1 | DnaD domain protein | - |
| UXR25_RS05720 (UXR25_05720) | - | 1150045..1150263 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXR25_RS05725 (UXR25_05725) | - | 1150272..1150679 (+) | 408 | WP_031844431.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXR25_RS05730 (UXR25_05730) | - | 1150679..1150864 (+) | 186 | WP_031768172.1 | DUF3113 family protein | - |
| UXR25_RS05735 (UXR25_05735) | - | 1150865..1151224 (+) | 360 | WP_031768174.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXR25_RS05740 (UXR25_05740) | - | 1151228..1151470 (+) | 243 | WP_000131382.1 | SAV1978 family virulence-associated passenger protein | - |
| UXR25_RS05745 (UXR25_05745) | - | 1151511..1151762 (+) | 252 | WP_001065074.1 | DUF1024 family protein | - |
| UXR25_RS05750 (UXR25_05750) | - | 1151752..1151934 (+) | 183 | WP_000028425.1 | hypothetical protein | - |
| UXR25_RS05755 (UXR25_05755) | - | 1151927..1152463 (+) | 537 | WP_000185704.1 | dUTPase | - |
| UXR25_RS05760 (UXR25_05760) | - | 1152500..1152673 (+) | 174 | WP_001209219.1 | hypothetical protein | - |
| UXR25_RS05765 (UXR25_05765) | - | 1152690..1152896 (+) | 207 | WP_001621289.1 | DUF1381 domain-containing protein | - |
| UXR25_RS05770 (UXR25_05770) | rinB | 1152893..1153066 (+) | 174 | WP_000595244.1 | transcriptional activator RinB | - |
| UXR25_RS05775 (UXR25_05775) | - | 1153067..1153213 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| UXR25_RS05780 (UXR25_05780) | - | 1153237..1153659 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| UXR25_RS05785 (UXR25_05785) | - | 1153846..1154286 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXR25_RS05790 (UXR25_05790) | - | 1154273..1155550 (+) | 1278 | WP_000169945.1 | PBSX family phage terminase large subunit | - |
| UXR25_RS05795 (UXR25_05795) | - | 1155561..1157099 (+) | 1539 | WP_031766723.1 | phage portal protein | - |
| UXR25_RS05800 (UXR25_05800) | - | 1157106..1158101 (+) | 996 | WP_156991916.1 | minor capsid protein | - |
| UXR25_RS05805 (UXR25_05805) | - | 1158174..1158344 (+) | 171 | WP_000072202.1 | hypothetical protein | - |
| UXR25_RS05810 (UXR25_05810) | - | 1158372..1158459 (+) | 88 | Protein_1133 | hypothetical protein | - |
| UXR25_RS05815 (UXR25_05815) | - | 1158453..1159073 (+) | 621 | WP_341514797.1 | DUF4355 domain-containing protein | - |
| UXR25_RS05820 (UXR25_05820) | - | 1159087..1160061 (+) | 975 | WP_000438512.1 | phage major capsid protein | - |
| UXR25_RS05825 (UXR25_05825) | - | 1160083..1160370 (+) | 288 | WP_001114088.1 | hypothetical protein | - |
| UXR25_RS05830 (UXR25_05830) | - | 1160379..1160711 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| UXR25_RS05835 (UXR25_05835) | - | 1160708..1161010 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| UXR25_RS05840 (UXR25_05840) | - | 1161010..1161357 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXR25_RS05845 (UXR25_05845) | - | 1161369..1161752 (+) | 384 | WP_000188645.1 | hypothetical protein | - |
| UXR25_RS05850 (UXR25_05850) | - | 1161771..1162352 (+) | 582 | WP_015977705.1 | phage major tail protein, TP901-1 family | - |
| UXR25_RS05855 (UXR25_05855) | - | 1162414..1162779 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| UXR25_RS05860 (UXR25_05860) | - | 1162809..1163153 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXR25_RS05865 (UXR25_05865) | - | 1163170..1166637 (+) | 3468 | WP_000141480.1 | hypothetical protein | - |
| UXR25_RS05870 (UXR25_05870) | - | 1166650..1167597 (+) | 948 | WP_000350675.1 | phage tail family protein | - |
| UXR25_RS05875 (UXR25_05875) | - | 1167606..1169507 (+) | 1902 | WP_031864422.1 | SGNH/GDSL hydrolase family protein | - |
| UXR25_RS05880 (UXR25_05880) | - | 1169522..1171432 (+) | 1911 | WP_000066423.1 | hypothetical protein | - |
| UXR25_RS05885 (UXR25_05885) | - | 1171432..1173255 (+) | 1824 | WP_341514801.1 | phage baseplate upper protein | - |
| UXR25_RS05890 (UXR25_05890) | - | 1173255..1173632 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| UXR25_RS05895 (UXR25_05895) | - | 1173636..1173809 (+) | 174 | WP_001800921.1 | XkdX family protein | - |
| UXR25_RS05900 (UXR25_05900) | - | 1173849..1174148 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| UXR25_RS05905 (UXR25_05905) | - | 1174285..1176183 (+) | 1899 | WP_000524015.1 | glucosaminidase domain-containing protein | - |
| UXR25_RS05910 (UXR25_05910) | - | 1176196..1177368 (+) | 1173 | WP_341514802.1 | BppU family phage baseplate upper protein | - |
| UXR25_RS05915 (UXR25_05915) | - | 1177374..1177769 (+) | 396 | WP_000398882.1 | hypothetical protein | - |
| UXR25_RS05920 (UXR25_05920) | - | 1177826..1178263 (+) | 438 | WP_000354135.1 | phage holin | - |
| UXR25_RS05925 (UXR25_05925) | - | 1178244..1179689 (+) | 1446 | WP_001148142.1 | SH3 domain-containing protein | - |
| UXR25_RS05930 (UXR25_05930) | - | 1179932..1180084 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| UXR25_RS05935 (UXR25_05935) | - | 1180155..1180265 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| UXR25_RS05940 (UXR25_05940) | - | 1180267..1180452 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17747.64 Da Isoelectric Point: 4.9816
>NTDB_id=975389 UXR25_RS05710 WP_000934768.1 1148651..1149121(+) (ssbA) [Staphylococcus aureus strain BSN152]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYKQQAQQSRGQSQYPYNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=975389 UXR25_RS05710 WP_000934768.1 1148651..1149121(+) (ssbA) [Staphylococcus aureus strain BSN152]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACAAACAACAAGCGCAACAATCACGTGGACAGTCTCAATATCCATATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |