Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB4Y54_RS01000 Genome accession   NZ_AP031325
Coordinates   170964..172448 (+) Length   494 a.a.
NCBI ID   WP_011174141.1    Uniprot ID   Q72GR3
Organism   Thermus thermophilus strain TF21     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 165964..177448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y54_RS00975 (TthTF21_01840) - 166570..166872 (-) 303 WP_008630585.1 proton-translocating transhydrogenase family protein -
  AB4Y54_RS00980 (TthTF21_01850) - 166872..167999 (-) 1128 WP_353300457.1 NAD(P) transhydrogenase subunit alpha -
  AB4Y54_RS00985 (TthTF21_01860) - 168111..169010 (+) 900 Protein_184 DMT family transporter -
  AB4Y54_RS00990 (TthTF21_01870) - 169007..169819 (+) 813 WP_014628950.1 DMT family transporter -
  AB4Y54_RS00995 (TthTF21_01880) - 169821..170951 (+) 1131 WP_353300459.1 MFS transporter -
  AB4Y54_RS01000 (TthTF21_01890) comM 170964..172448 (+) 1485 WP_011174141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB4Y54_RS01005 (TthTF21_01900) - 172445..174457 (-) 2013 WP_353300460.1 molybdopterin oxidoreductase family protein -
  AB4Y54_RS01010 (TthTF21_01910) - 174462..176003 (-) 1542 WP_353300461.1 polyhydroxybutyrate depolymerase -
  AB4Y54_RS01015 (TthTF21_01920) - 176028..176640 (+) 613 Protein_190 ribonuclease HII -
  AB4Y54_RS01020 (TthTF21_01930) - 176680..177159 (+) 480 WP_353300463.1 DUF4384 domain-containing protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52867.22 Da        Isoelectric Point: 8.4718

>NTDB_id=97411 AB4Y54_RS01000 WP_011174141.1 170964..172448(+) (comM) [Thermus thermophilus strain TF21]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSQF
DLPIALGLLAAQGVVPLEALSPFALAGELGLDGSLRPVPGAVNLALGALAEGKKLLLPLESAKEAALVEGVEVYGARSLQ
EAVAFLKGEEALAEARPEEAPEAVEALDLRDVKGQAKAKRALEIAAAGFHHLLMVGSPGSGKTMLARRLPFLLPPLSREE
ALEVTRIHSAAGKPVRGLVKAPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSREALEALRQPLEDGV
VTVARARASLTFPARFLLVAAMNPCPCGWHGDPERPCTCTPAAQRRYAARISGPLLDRFDLVVEVPRLTPEELARAPEGE
GTEAVRERVLRARERMLARQGRPNGLLSGRALREHARLTPPAQALLQEAAKRMLLSARSYDRVLRVARTVADLLGEERVG
EAHVAEALAYRRAL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=97411 AB4Y54_RS01000 WP_011174141.1 170964..172448(+) (comM) [Thermus thermophilus strain TF21]
ATGCTGGCCCAGGTGCGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGATGTTAGCCCGGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCCGACAAGGCGGTGGAGGAAAGCCGGGAGCGGGTGCGGGCCGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCCCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTTCGGAAGGAGGGGAGCCAGTTT
GACCTTCCCATCGCCCTGGGCCTCCTCGCGGCCCAGGGGGTGGTGCCCCTCGAGGCCCTCTCCCCCTTCGCCCTCGCGGG
GGAGCTTGGCTTAGACGGGAGCCTGAGGCCCGTTCCCGGGGCGGTGAACCTGGCCCTGGGGGCCTTGGCCGAGGGGAAGA
AGCTCCTCCTGCCCCTGGAGAGCGCCAAGGAGGCGGCCCTGGTGGAGGGGGTGGAGGTCTACGGGGCGAGAAGCCTCCAG
GAAGCCGTGGCCTTCCTCAAGGGCGAGGAGGCCTTGGCCGAGGCCCGGCCCGAGGAGGCCCCGGAAGCGGTGGAGGCGCT
GGACCTCAGGGACGTCAAGGGCCAGGCCAAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCGGGCTTCCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGGAAGACCATGCTGGCGCGGCGGCTTCCCTTCCTCCTCCCACCCCTCTCCCGGGAGGAG
GCCTTGGAGGTGACCCGGATCCACTCCGCCGCGGGGAAGCCGGTGCGGGGGCTTGTGAAGGCCCCGCCCTTCCGCGCCCC
GCACCACACGGTGAGCTACGCCGGGCTCATCGGGGGTGGGGCCATCCCCAAGCCCGGGGAGGTCTCCTTGGCCCACCGGG
GCGTGCTCTTTCTGGACGAGTTCCCGGAGTTTTCCCGGGAGGCCCTCGAGGCCCTGCGCCAGCCCCTGGAGGACGGGGTG
GTGACCGTGGCCCGGGCCCGGGCAAGCCTCACCTTCCCCGCCCGCTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGCACGGGGACCCGGAAAGGCCTTGCACCTGCACCCCCGCCGCCCAGAGGCGCTACGCGGCCCGGATCTCCGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTCACCCCCGAGGAGCTCGCCCGCGCCCCCGAGGGGGAG
GGCACGGAGGCGGTGCGGGAGCGGGTCCTAAGGGCCCGGGAGCGGATGCTCGCCCGCCAGGGGAGGCCCAACGGGCTCCT
TTCGGGGCGGGCCCTGAGGGAGCACGCCCGCCTCACCCCACCGGCCCAGGCCCTCCTCCAGGAGGCGGCCAAGCGAATGC
TCCTTTCGGCCCGGAGCTACGACCGCGTCCTCCGGGTGGCCCGCACCGTCGCCGACCTCCTGGGCGAGGAGAGGGTGGGG
GAGGCCCACGTGGCCGAGGCCCTGGCCTACCGCAGGGCCCTCTAG

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72GR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

48.583

100

0.486
  comM Vibrio cholerae strain A1552

48.583

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  comM Acinetobacter baylyi ADP1

47.862

99.393

0.476
  comM Glaesserella parasuis strain SC1401

46.23

100

0.472
  comM Vibrio campbellii strain DS40M4

46.559

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

100

0.46
  comM Legionella pneumophila str. Paris

44.689

100

0.451
  comM Legionella pneumophila strain ERS1305867

44.689

100

0.451