Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WNC56_RS17125 Genome accession   NZ_CP150833
Coordinates   3306616..3307050 (-) Length   144 a.a.
NCBI ID   WP_051170133.1    Uniprot ID   -
Organism   Bacillus safensis strain DMB13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3306140..3325433 3306616..3307050 within 0


Gene organization within MGE regions


Location: 3306140..3325433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WNC56_RS17120 (WNC56_17090) - 3306140..3306559 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  WNC56_RS17125 (WNC56_17095) comFC 3306616..3307050 (-) 435 WP_051170133.1 ComF family protein Machinery gene
  WNC56_RS17130 (WNC56_17100) - 3307299..3307592 (-) 294 WP_041088040.1 late competence development ComFB family protein -
  WNC56_RS17135 (WNC56_17105) epsC 3307917..3308765 (-) 849 WP_254965332.1 serine O-acetyltransferase EpsC -
  WNC56_RS17140 (WNC56_17110) pyrH 3308866..3309606 (+) 741 WP_254965331.1 UMP kinase -
  WNC56_RS17145 (WNC56_17115) - 3309662..3310840 (-) 1179 WP_254965329.1 MFS transporter -
  WNC56_RS17150 (WNC56_17120) - 3310903..3311823 (-) 921 WP_254965327.1 phosphotransferase -
  WNC56_RS17155 (WNC56_17125) - 3311838..3313022 (-) 1185 WP_406845871.1 ATP-grasp domain-containing protein -
  WNC56_RS17160 (WNC56_17130) - 3313015..3314235 (-) 1221 WP_254965324.1 acetyl-CoA carboxylase biotin carboxylase subunit family protein -
  WNC56_RS17165 (WNC56_17135) - 3314246..3315841 (-) 1596 WP_254965322.1 class I adenylate-forming enzyme family protein -
  WNC56_RS17170 (WNC56_17140) - 3315881..3316138 (-) 258 WP_254965320.1 acyl carrier protein -
  WNC56_RS17175 (WNC56_17145) - 3316135..3316857 (-) 723 WP_254965319.1 SDR family NAD(P)-dependent oxidoreductase -
  WNC56_RS17180 (WNC56_17150) - 3316858..3317826 (-) 969 WP_254965317.1 alpha/beta hydrolase -
  WNC56_RS17185 (WNC56_17155) - 3317831..3319348 (-) 1518 WP_254965315.1 NAD(P)-dependent oxidoreductase -
  WNC56_RS17190 (WNC56_17160) - 3319363..3320058 (-) 696 WP_254965312.1 hypothetical protein -
  WNC56_RS17195 (WNC56_17165) - 3320070..3320918 (-) 849 WP_254965310.1 NAD(P)-dependent oxidoreductase -
  WNC56_RS17200 (WNC56_17170) - 3320922..3322397 (-) 1476 WP_254965308.1 nucleoside monophosphate kinase -
  WNC56_RS17205 (WNC56_17175) - 3322394..3323506 (-) 1113 WP_254965306.1 nucleotidyltransferase family protein -
  WNC56_RS17210 (WNC56_17180) - 3323503..3323805 (-) 303 WP_254965304.1 Dabb family protein -
  WNC56_RS17215 (WNC56_17185) - 3324591..3325433 (-) 843 WP_406845872.1 DegV family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16306.11 Da        Isoelectric Point: 10.4822

>NTDB_id=972801 WNC56_RS17125 WP_051170133.1 3306616..3307050(-) (comFC) [Bacillus safensis strain DMB13]
MKDVLARFKFRGDTALAELFQKDVQAAFKHSFCIKDPLLIPIPLSHERLKERGFNQSVIIASLLDKPILQPLVKIHQSKQ
SKKKKNERLDQKGLFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=972801 WNC56_RS17125 WP_051170133.1 3306616..3307050(-) (comFC) [Bacillus safensis strain DMB13]
ATGAAAGATGTCCTTGCCCGCTTTAAATTTCGGGGTGATACGGCTTTAGCTGAGCTGTTTCAAAAAGATGTACAAGCAGC
ATTTAAACATTCCTTCTGCATAAAAGACCCATTGCTGATACCGATTCCTTTAAGTCATGAAAGACTAAAAGAAAGAGGAT
TTAATCAGTCCGTGATAATCGCTTCTTTGCTAGATAAGCCAATATTGCAGCCACTCGTGAAAATACATCAAAGTAAGCAG
TCTAAAAAAAAGAAAAATGAACGCCTAGATCAAAAAGGATTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGA
TATTATATTAGTTGATGATATCTATACAACGGGAGCAACCATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTA
AAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

51.034

100

0.514
  comFC Lactococcus lactis subsp. cremoris KW2

41.958

99.306

0.417
  comFC/cflB Streptococcus mitis NCTC 12261

38.462

99.306

0.382
  comFC/cflB Streptococcus mitis SK321

37.762

99.306

0.375
  comFC/cflB Streptococcus pneumoniae TIGR4

37.762

99.306

0.375
  comFC/cflB Streptococcus pneumoniae Rx1

37.762

99.306

0.375
  comFC/cflB Streptococcus pneumoniae D39

37.762

99.306

0.375
  comFC/cflB Streptococcus pneumoniae R6

37.762

99.306

0.375

Multiple sequence alignment