Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AABD45_RS15085 | Genome accession | NZ_CP150831 |
| Coordinates | 3238109..3238642 (+) | Length | 177 a.a. |
| NCBI ID | WP_225491033.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain Per1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3233109..3243642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABD45_RS15070 (AABD45_15605) | uvrA | 3233138..3235960 (-) | 2823 | WP_406849106.1 | excinuclease ABC subunit UvrA | - |
| AABD45_RS15075 (AABD45_15610) | galU | 3236104..3236976 (-) | 873 | WP_017420065.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AABD45_RS15080 (AABD45_15615) | qstR | 3237162..3237809 (-) | 648 | WP_130243172.1 | response regulator transcription factor | Regulator |
| AABD45_RS15085 (AABD45_15620) | ssb | 3238109..3238642 (+) | 534 | WP_225491033.1 | single-stranded DNA-binding protein | Machinery gene |
| AABD45_RS15090 (AABD45_15625) | csrD | 3238795..3240792 (+) | 1998 | WP_026130604.1 | RNase E specificity factor CsrD | - |
| AABD45_RS15095 (AABD45_15630) | - | 3240805..3242265 (+) | 1461 | WP_406849107.1 | MSHA biogenesis protein MshI | - |
| AABD45_RS15100 (AABD45_15635) | gspM | 3242262..3242912 (+) | 651 | WP_406849108.1 | type II secretion system protein GspM | - |
| AABD45_RS15105 (AABD45_15640) | - | 3242905..3243225 (+) | 321 | WP_406849109.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19579.76 Da Isoelectric Point: 5.2358
>NTDB_id=972746 AABD45_RS15085 WP_225491033.1 3238109..3238642(+) (ssb) [Vibrio vulnificus strain Per1]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QPQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVQGYNGIMQMLGGRQQQGGAPAMGGAPQQQQGGWGQPQQPAAQPSYQKQAPAQQQPM
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=972746 AABD45_RS15085 WP_225491033.1 3238109..3238642(+) (ssb) [Vibrio vulnificus strain Per1]
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACGGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAACAGGCTCCAGCGCAACAACAGCCAATG
CAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTAATCTTGGTAGGGAACTTAGGTAACGACCCTGAAATTCGTTACATGCCAAGTGG
CGGTGCGGTGGCGAATATCACCGTTGCAACTTCAGAAACTTGGCGCGACAAAGCGACAGGCGAGCCGCGTGAGAAAACAG
AATGGCACCGTGTGACGTTATACGGCAAGCTGGCAGAAGTCGCGGGTGAATACCTACGCAAAGGTTCTCAAGTCTACATT
GAAGGACAACTGCAAACGCGTAAATGGCAAGACCAAAATGGTCAAGACCGTTATTCAACGGAAGTCGTTGTACAAGGCTA
CAATGGCATTATGCAAATGTTGGGTGGCCGTCAGCAGCAAGGTGGCGCTCCAGCGATGGGCGGTGCTCCGCAGCAGCAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCCGCACAGCCGTCTTACCAAAAACAGGCTCCAGCGCAACAACAGCCAATG
CAGCCTCAGTACAATGAGCCGCCAATGGACTTTGACGACGACATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
84.27 |
100 |
0.847 |
| ssb | Glaesserella parasuis strain SC1401 |
51.309 |
100 |
0.554 |
| ssb | Neisseria meningitidis MC58 |
46.196 |
100 |
0.48 |
| ssb | Neisseria gonorrhoeae MS11 |
46.196 |
100 |
0.48 |