Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   AABD45_RS15080 Genome accession   NZ_CP150831
Coordinates   3237162..3237809 (-) Length   215 a.a.
NCBI ID   WP_130243172.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Per1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3232162..3242809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD45_RS15070 (AABD45_15605) uvrA 3233138..3235960 (-) 2823 WP_406849106.1 excinuclease ABC subunit UvrA -
  AABD45_RS15075 (AABD45_15610) galU 3236104..3236976 (-) 873 WP_017420065.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  AABD45_RS15080 (AABD45_15615) qstR 3237162..3237809 (-) 648 WP_130243172.1 response regulator transcription factor Regulator
  AABD45_RS15085 (AABD45_15620) ssb 3238109..3238642 (+) 534 WP_225491033.1 single-stranded DNA-binding protein Machinery gene
  AABD45_RS15090 (AABD45_15625) csrD 3238795..3240792 (+) 1998 WP_026130604.1 RNase E specificity factor CsrD -
  AABD45_RS15095 (AABD45_15630) - 3240805..3242265 (+) 1461 WP_406849107.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24702.63 Da        Isoelectric Point: 9.8565

>NTDB_id=972745 AABD45_RS15080 WP_130243172.1 3237162..3237809(-) (qstR) [Vibrio vulnificus strain Per1]
MRKSSYARKPFFISLQNEQTPEFVTALAKQIQMEIPVITPATLMQADPNHRNRILLIDHQQHKVLLREIKNLPLIWKGFE
TVLCNVPNRLTTEELIGFGQCKAIFYRDTTIADMTKGLNSVINGKSWLPRDVSAQLIHYYRNMVCSHTSPVNVDLTMREI
QVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWADQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=972745 AABD45_RS15080 WP_130243172.1 3237162..3237809(-) (qstR) [Vibrio vulnificus strain Per1]
ATGAGAAAATCTTCTTACGCGCGGAAGCCATTTTTTATCAGTTTGCAAAACGAACAAACTCCTGAGTTCGTCACTGCATT
AGCGAAACAGATTCAAATGGAAATCCCTGTGATTACCCCGGCAACGCTCATGCAAGCCGATCCCAATCATCGTAATCGCA
TCTTATTGATTGATCATCAGCAACATAAGGTGCTGCTGAGAGAGATTAAAAACCTACCGCTAATATGGAAGGGGTTTGAA
ACGGTCCTGTGTAATGTACCTAACCGATTGACGACTGAGGAACTGATTGGCTTTGGCCAGTGCAAAGCGATCTTCTACCG
AGACACAACCATTGCAGACATGACCAAAGGACTAAATTCGGTGATTAATGGTAAGAGCTGGCTGCCACGCGACGTCAGCG
CACAACTCATCCACTACTATCGAAATATGGTTTGCTCACACACTTCACCAGTGAATGTGGATCTCACGATGAGAGAAATT
CAAGTGCTACGCTGCGTGCAGTCTGGCAAATCAAATTCTCAAATCGCCGAAGACCTTTTCATTAGCGAGTTCACCGTAAA
GTCGCATCTCTATCAAACCTTTAGAAAGCTTTCCGTGAAGAATCGTGTCCAAGCGGCCGCGTGGGCTGACCAAAATTTGA
TCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

61.395

100

0.614
  qstR Vibrio parahaemolyticus RIMD 2210633

60.93

100

0.609
  qstR Vibrio cholerae strain A1552

47.196

99.535

0.47

Multiple sequence alignment