Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACL656_RS00370 Genome accession   NZ_CP178597
Coordinates   90630..91298 (+) Length   222 a.a.
NCBI ID   WP_033815110.1    Uniprot ID   -
Organism   Escherichia coli strain ZF8-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 85630..96298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL656_RS00340 (ACL656_00340) yicC 85649..86512 (-) 864 WP_000621326.1 YicC/YloC family endoribonuclease -
  ACL656_RS00345 (ACL656_00345) rph 86639..87355 (+) 717 WP_001247093.1 ribonuclease PH -
  ACL656_RS00350 (ACL656_00350) pyrE 87421..88062 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ACL656_RS00355 (ACL656_00355) slmA 88099..88695 (-) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ACL656_RS00360 (ACL656_00360) dut 88802..89260 (-) 459 WP_033815112.1 dUTP diphosphatase -
  ACL656_RS00365 (ACL656_00365) coaBC 89238..90458 (-) 1221 WP_033815111.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ACL656_RS00370 (ACL656_00370) radC 90630..91298 (+) 669 WP_033815110.1 RadC family protein Machinery gene
  ACL656_RS00375 (ACL656_00375) rpmB 91515..91751 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  ACL656_RS00380 (ACL656_00380) rpmG 91772..91939 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  ACL656_RS00385 (ACL656_00385) mutM 92037..92846 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ACL656_RS00390 (ACL656_00390) coaD 92885..93364 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  ACL656_RS00395 (ACL656_00395) waaA 93372..94649 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ACL656_RS00400 (ACL656_00400) rfaQ 95062..96120 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25288.37 Da        Isoelectric Point: 7.9748

>NTDB_id=972466 ACL656_RS00370 WP_033815110.1 90630..91298(+) (radC) [Escherichia coli strain ZF8-1]
MKNNAQLLMPREKMLKFGISTLTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=972466 ACL656_RS00370 WP_033815110.1 90630..91298(+) (radC) [Escherichia coli strain ZF8-1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCACCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAAATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment