Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WOC56_RS00055 Genome accession   NZ_CP150779
Coordinates   3501..3971 (-) Length   156 a.a.
NCBI ID   WP_000934760.1    Uniprot ID   A0AAN2D761
Organism   Staphylococcus aureus strain TUM20823     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 36..29558 3501..3971 within 0


Gene organization within MGE regions


Location: 36..29558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC56_RS00010 (WOC56_00010) - 36..242 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  WOC56_RS00015 (WOC56_00015) - 239..484 (-) 246 WP_001282074.1 hypothetical protein -
  WOC56_RS00020 (WOC56_00020) - 521..1057 (-) 537 WP_001066447.1 dUTP diphosphatase -
  WOC56_RS00025 (WOC56_00025) - 1050..1298 (-) 249 WP_001065094.1 DUF1024 family protein -
  WOC56_RS00030 (WOC56_00030) - 1313..1555 (-) 243 WP_000131370.1 SAV1978 family virulence-associated passenger protein -
  WOC56_RS00035 (WOC56_00035) - 1559..1927 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  WOC56_RS00040 (WOC56_00040) - 1940..2344 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  WOC56_RS00045 (WOC56_00045) - 2353..2571 (-) 219 WP_000338530.1 hypothetical protein -
  WOC56_RS00050 (WOC56_00050) - 2578..3471 (-) 894 WP_000148321.1 DnaD domain-containing protein -
  WOC56_RS00055 (WOC56_00055) ssbA 3501..3971 (-) 471 WP_000934760.1 single-stranded DNA-binding protein Machinery gene
  WOC56_RS00060 (WOC56_00060) - 3972..4589 (-) 618 WP_071665632.1 MBL fold metallo-hydrolase -
  WOC56_RS00065 (WOC56_00065) - 4670..5590 (-) 921 WP_000138475.1 recombinase RecT -
  WOC56_RS00070 (WOC56_00070) - 5592..7535 (-) 1944 WP_000700555.1 AAA family ATPase -
  WOC56_RS00075 (WOC56_00075) - 7544..7807 (-) 264 WP_001205732.1 hypothetical protein -
  WOC56_RS00080 (WOC56_00080) - 7816..8076 (-) 261 WP_000291510.1 DUF1108 family protein -
  WOC56_RS00085 (WOC56_00085) - 8081..8383 (-) 303 WP_000165371.1 DUF2482 family protein -
  WOC56_RS00090 (WOC56_00090) - 8478..8639 (-) 162 WP_000048129.1 DUF1270 family protein -
  WOC56_RS00095 (WOC56_00095) - 8636..8959 (-) 324 WP_001120201.1 DUF771 domain-containing protein -
  WOC56_RS00100 (WOC56_00100) - 9014..9394 (+) 381 WP_000762521.1 DUF2513 domain-containing protein -
  WOC56_RS00105 (WOC56_00105) - 9381..9578 (-) 198 WP_001148862.1 hypothetical protein -
  WOC56_RS00110 (WOC56_00110) - 9594..10346 (-) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  WOC56_RS00115 (WOC56_00115) - 10397..10726 (+) 330 WP_000128907.1 hypothetical protein -
  WOC56_RS00120 (WOC56_00120) - 10715..10930 (-) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  WOC56_RS00125 (WOC56_00125) - 10946..11209 (-) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  WOC56_RS00130 (WOC56_00130) - 11206..11379 (-) 174 WP_001801500.1 hypothetical protein -
  WOC56_RS00135 (WOC56_00135) - 11342..12055 (+) 714 WP_001031454.1 XRE family transcriptional regulator -
  WOC56_RS00140 (WOC56_00140) - 12071..13003 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  WOC56_RS00145 (WOC56_00145) - 13009..13350 (+) 342 WP_000591749.1 hypothetical protein -
  WOC56_RS00150 (WOC56_00150) - 13554..13736 (+) 183 WP_000705248.1 hypothetical protein -
  WOC56_RS00155 (WOC56_00155) - 13836..14300 (+) 465 WP_000825947.1 hypothetical protein -
  WOC56_RS00160 (WOC56_00160) - 14359..15396 (+) 1038 WP_000857191.1 site-specific integrase -
  WOC56_RS00165 (WOC56_00165) sph 15453..16277 (+) 825 Protein_32 sphingomyelin phosphodiesterase -
  WOC56_RS00170 (WOC56_00170) lukG 16515..17531 (-) 1017 WP_000595324.1 bi-component leukocidin LukGH subunit G -
  WOC56_RS00175 (WOC56_00175) lukH 17553..18608 (-) 1056 WP_000791407.1 bi-component leukocidin LukGH subunit H -
  WOC56_RS00180 (WOC56_00180) - 19043..20266 (+) 1224 WP_000206638.1 ArgE/DapE family deacylase -
  WOC56_RS00185 (WOC56_00185) - 20638..21483 (-) 846 WP_000812008.1 class I SAM-dependent methyltransferase -
  WOC56_RS00190 (WOC56_00190) - 21545..22456 (-) 912 WP_000825510.1 iron-hydroxamate ABC transporter substrate-binding protein -
  WOC56_RS00195 (WOC56_00195) - 22617..23924 (+) 1308 WP_001045079.1 TrkH family potassium uptake protein -
  WOC56_RS00200 (WOC56_00200) - 24777..25220 (-) 444 WP_000022887.1 GNAT family N-acetyltransferase -
  WOC56_RS00205 (WOC56_00205) - 25326..25763 (-) 438 WP_011447041.1 hypothetical protein -
  WOC56_RS00210 (WOC56_00210) - 26081..26671 (-) 591 WP_001293058.1 terminase small subunit -
  WOC56_RS00215 (WOC56_00215) - 26668..26880 (-) 213 WP_000128898.1 LuxR C-terminal-related transcriptional regulator -
  WOC56_RS00220 (WOC56_00220) - 26941..27487 (+) 547 Protein_43 site-specific integrase -
  WOC56_RS00225 (WOC56_00225) groL 27582..29198 (-) 1617 WP_000240645.1 chaperonin GroEL -
  WOC56_RS00230 (WOC56_00230) groES 29274..29558 (-) 285 WP_212556265.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17641.52 Da        Isoelectric Point: 5.2672

>NTDB_id=972466 WOC56_RS00055 WP_000934760.1 3501..3971(-) (ssbA) [Staphylococcus aureus strain TUM20823]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=972466 WOC56_RS00055 WP_000934760.1 3501..3971(-) (ssbA) [Staphylococcus aureus strain TUM20823]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.932

100

0.635
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment