Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   WOC66_RS13800 Genome accession   NZ_CP150743
Coordinates   2780828..2781325 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TUM22705     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2775828..2786325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC66_RS13775 (WOC66_13775) gcvPB 2775990..2777462 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  WOC66_RS13780 (WOC66_13780) gcvPA 2777455..2778801 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  WOC66_RS13785 (WOC66_13785) gcvT 2778821..2779912 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  WOC66_RS13790 (WOC66_13790) - 2780071..2780595 (-) 525 WP_001015117.1 shikimate kinase -
  WOC66_RS13795 (WOC66_13795) - 2780585..2780731 (-) 147 WP_001789879.1 hypothetical protein -
  WOC66_RS13800 (WOC66_13800) comGF 2780828..2781325 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  WOC66_RS13805 (WOC66_13805) comGE 2781243..2781542 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  WOC66_RS13810 (WOC66_13810) comGD 2781529..2781975 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  WOC66_RS13815 (WOC66_13815) comGC 2781953..2782264 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  WOC66_RS13820 (WOC66_13820) comGB 2782278..2783348 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  WOC66_RS13825 (WOC66_13825) comGA 2783320..2784294 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=971628 WOC66_RS13800 WP_001789864.1 2780828..2781325(-) (comGF) [Staphylococcus aureus strain TUM22705]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=971628 WOC66_RS13800 WP_001789864.1 2780828..2781325(-) (comGF) [Staphylococcus aureus strain TUM22705]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment