Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ACLRDL_RS10950 Genome accession   NZ_CP178387
Coordinates   2410288..2413536 (-) Length   1082 a.a.
NCBI ID   WP_413084091.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2405288..2418536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS10930 (ACLRDL_10930) - 2406096..2406524 (+) 429 WP_000929906.1 HIT family protein -
  ACLRDL_RS10935 (ACLRDL_10935) - 2406786..2407016 (-) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  ACLRDL_RS10940 (ACLRDL_10940) feoB 2407013..2409289 (-) 2277 WP_001986248.1 Fe(2+) transporter permease subunit FeoB -
  ACLRDL_RS10945 (ACLRDL_10945) - 2409286..2409516 (-) 231 WP_000777870.1 FeoA family protein -
  ACLRDL_RS10950 (ACLRDL_10950) tfoS 2410288..2413536 (-) 3249 WP_413084091.1 AraC family transcriptional regulator Regulator
  ACLRDL_RS10955 (ACLRDL_10955) - 2413598..2414775 (+) 1178 WP_086010879.1 IS3-like element ISVch4 family transposase -
  ACLRDL_RS10960 (ACLRDL_10960) tfoS 2414768..2414893 (-) 126 WP_413084192.1 hypothetical protein Regulator
  ACLRDL_RS10965 (ACLRDL_10965) znuA 2415096..2415980 (-) 885 WP_000952844.1 zinc ABC transporter substrate-binding protein ZnuA -
  ACLRDL_RS10970 (ACLRDL_10970) znuC 2416064..2416852 (+) 789 WP_000996146.1 zinc ABC transporter ATP-binding protein ZnuC -
  ACLRDL_RS10975 (ACLRDL_10975) znuB 2416845..2417627 (+) 783 WP_000571524.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 1082 a.a.        Molecular weight: 122754.46 Da        Isoelectric Point: 6.7971

>NTDB_id=971628 ACLRDL_RS10950 WP_413084091.1 2410288..2413536(-) (tfoS) [Vibrio cholerae isolate CTMA_1842]
MPLQQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLPQLSSHIVYANSAFWAFEQHELFRTYPGGEREL
MLSLTPGTQIIQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQLNSASKVVINDAQFLVSKWALATNVGVYLSDE
QGFAHVKNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDRIGSSHVLSIAETEKEYWIGTEDGLFVYSFITG
KIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQFTRYPAQALSNDGSKTPIGKIAALNSDGDYLA
ITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNLSRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWG
TSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRITLLAAVKDGIVIGTEHGAYSLLEKQIRFDFSSHRYGEILQVAEDSSG
HIWLVGSYGVFQWRKDQPEAVTVELIEENIQPLCIAESKQGMWLISTKGISYYRNQELTKHFGAPYGLISNEFLSASCAV
GEEQDTSSLIIGSHFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKLLGYRMSEPLKIAYGDSISFQFGALPSSRSQSL
EYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANSTQRYRTEALFDFEVLQPWYMTSIALVGYVLSVLGLLALALWWR
TRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILGNVLDNIDASLRHLSSYAKVRAWSEFEAPFNKV
KQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYSGEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQ
ELTIQLEVRNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRSGGVLHVLALKERNVIELAWPLATLPELETIHK
PEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTTAQALYVSERSLQRRFKAATGKTFKESLNEVRLEKACQSL
LSGAKIAQVAFDCGFNDPSYFSQRFKHHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3249 bp        

>NTDB_id=971628 ACLRDL_RS10950 WP_413084091.1 2410288..2413536(-) (tfoS) [Vibrio cholerae isolate CTMA_1842]
ATGCCACTACAGCAGGGGAAAGTTATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGGATTTGGGTACATGATGT
TCATGGCAAAGTGATGTACTTTGATGGACAAAACGTCTTGCCTCGTCGTGGTTCTGTTCTGCCGCAGTTGTCCAGTCATA
TTGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCCGGGGGAGAAAGAGAGCTG
ATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGGGCCTCAAATGGCATGATCTGGATGGTCGATGGGGAAAA
CTTCTATAGTTATGAGATCCGAAGTGGCCGCGTCGAATCCCTCTCGTTACATGAACTTTATCAGCTCAATAGTGCCAGCA
AGGTCGTGATTAACGATGCGCAGTTTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGTGTATTTATCTGATGAA
CAAGGTTTTGCCCATGTAAAAAATTCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATAAGCGGCGAGAGCTATT
AGTTGGGTCTAAACGTGGCGCGTTAGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGAATTGGTTCCTCCCATG
TCCTCTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTTTACTCTTTTATCACCGGG
AAAATCGTGCAACTTGAGAGTAACAACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACGCCATGGTGAATGATTT
TCAAGGTGGAATGTGGATAGGAACTGACAAGGGGATTTTTTATTACTCCCTATTTGGCCAGCAGTTTACTCGGTATCCGG
CGCAAGCATTATCTAACGACGGAAGTAAAACACCGATCGGTAAAATAGCCGCTCTTAACTCGGATGGAGACTATCTGGCG
ATAACCGCACAAGGCCTGTATAACTTTAATTTTTCAGATGAGCTACGTAAGCATCTTATCTATCCAGGTAAAGTAAATGA
TTTTGTGATTGCCCAAGAGCATCTCTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTCAGTCGTCGTAGTATTG
ATACGCCCAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGTGACGGTAACTTATGGGGG
ACAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAATTACCGAGATTATGGTTCTGAATGGATGGTGAAGGC
TTTTTCTCCATCACGGATCACTCTGCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACGGAACATGGCGCTTATTCCC
TGCTTGAAAAACAGATCCGCTTTGATTTTTCGAGTCATCGCTATGGTGAGATTTTACAAGTTGCTGAAGATTCTTCAGGC
CACATTTGGCTTGTTGGCTCTTATGGGGTTTTTCAGTGGCGTAAAGATCAACCCGAAGCTGTCACTGTCGAGTTAATTGA
AGAGAATATACAGCCTTTGTGTATTGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAAGGGATCAGTTATTACC
GTAATCAAGAGCTCACTAAGCATTTTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTCTGCATCGTGTGCGGTG
GGTGAGGAGCAAGATACCTCATCTTTGATCATAGGATCGCATTTTGGTGTAGTGAAAACCAATACAGAAGAATTAGCGGT
GTCTAATTTGCCCAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTTTTGGGGTATCGTATGT
CCGAGCCACTAAAAATTGCTTATGGTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTCACGCAGCCAATCTTTA
GAATACAAACTCAACGATGAACAGCAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATCAACTTTTACCTGGTAA
GTATCGTTTGAAAGTCCGTAGCGCCAATTCGACACAGCGATACCGAACTGAGGCCCTGTTTGATTTTGAAGTCTTACAGC
CTTGGTATATGACCTCCATCGCGCTTGTCGGATATGTGCTGAGCGTGTTGGGGCTATTAGCACTCGCTTTATGGTGGCGA
ACAAGAATGATATTGGCAGCTAACCGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGTTACGTCATCAAAGTAA
AATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGTAACGTGTTAGACAATA
TTGATGCTTCATTGCGGCACTTATCTTCTTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGCACCGTTCAACAAGGTG
AAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATGATTTGCATCTTTTGAT
TGAGTCTGCATTGAAGAGTTGGCAGGAAGAGTACAGTAAAGCCTTGATTAAGCTAACTTACAGCGGTGAGCCTCGCTTTG
TGGAAGTCCGACAATTCAACCTTGATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACGTTTGTATAAGCATCAA
GAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTGCCCCAATCCAAAACAT
AGACAAAACCATGGTGACGTTATCTGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGTGGTGGTGTATTGCATG
TGCTCGCATTGAAAGAGCGTAATGTGATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTTAGAAACCATTCATAAA
CCAGAAGAAGGGGAGCAGGCGGCTAAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCAAAGTCGAGAAACTGAT
TGAGCTGCATTATAGCGACCCCAATTTCACCACATCCACTACAGCGCAGGCGCTTTATGTCTCTGAACGAAGTTTACAGC
GTCGCTTTAAAGCCGCGACAGGAAAAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAAAGCGTGTCAAAGCTTA
TTGAGTGGGGCGAAAATCGCACAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCAGTCAGCGTTTCAAACA
TCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1002-1077)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

99.261

100

0.994

Multiple sequence alignment