Detailed information NTG0971631

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: ACLRDL_RS12230
• Genome accession: NZ_CP178387
• Coordinates: 2673506..2674882 (-)
• Length: 458 a.a.
• NCBI ID: WP_032470109.1
• Uniprot ID: -
• Organism: Vibrio cholerae isolate CTMA_1842
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2668506..2679882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLRDL_RS12220 (ACLRDL_12220)	-	2669347..2671032 (+)	1686	WP_000615855.1	AMP-binding protein	-
ACLRDL_RS12225 (ACLRDL_12225)	fusA	2671146..2673233 (-)	2088	WP_000774525.1	elongation factor G	-
ACLRDL_RS12230 (ACLRDL_12230)	radA/sms	2673506..2674882 (-)	1377	WP_032470109.1	DNA repair protein RadA	Machinery gene
ACLRDL_RS12235 (ACLRDL_12235)	-	2675013..2677352 (+)	2340	WP_001187859.1	PilZ domain-containing protein	-
ACLRDL_RS12240 (ACLRDL_12240)	serB	2677557..2678537 (-)	981	WP_000339683.1	phosphoserine phosphatase	-
ACLRDL_RS12245 (ACLRDL_12245)	-	2678640..2679263 (+)	624	WP_000349084.1	YtjB family periplasmic protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49267.87 Da
• Isoelectric Point: 7.6828

>NTDB_id=971631 ACLRDL_RS12230 WP_032470109.1 2673506..2674882(-) (radA/sms) [Vibrio cholerae isolate CTMA_1842]
MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAKVQTLADIDLQEVPRFTSGFK
ELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRI
CQIAEQEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL
LDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEAASGSSVMVVWEGTRPLLVEIQALVDYSQ
LANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGL
AGEIRPVPSGQERLNEAFKHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL

Nucleotide

• Length: 1377 bp

>NTDB_id=971631 ACLRDL_RS12230 WP_032470109.1 2673506..2674882(-) (radA/sms) [Vibrio cholerae isolate CTMA_1842]
ATTGTGAAAGCTAAGCGCGCCTATGTATGTAATGAATGTGGAGCGGATTTTCCGCGTTGGCAAGGACAGTGTAATGCCTG
TGGTTCGTGGAATTCGATTTCAGAAGTTCGTTTAGCGGCTTCACCGCAAGTGGCGCGCAATGAACGGTTGGTCGGTTATG
CGGGAGCCCTTGAAGCGAAAGTACAAACTTTGGCTGATATTGATTTACAAGAAGTGCCTCGATTCACCAGTGGCTTTAAA
GAACTAGATCGCGTACTCGGCGGCGGAATTGTGCCGGGTGCGGCGATTTTGATTGGTGGTAATCCGGGCGCGGGTAAATC
GACCTTACTACTGCAAACCATGTGTTTACTTTCCGGACAGATGCCGACGTTGTACGTGACGGGCGAAGAATCGTTGCAGC
AGGTCGCGATGCGTGCTTCACGGCTTGGTTTGCCGAAACAGCATCTAAAAATGCTCTCAGAAACCAATGTGGATCGGATT
TGCCAGATTGCTGAGCAAGAAAAGCCGCGCATTATGGTCATCGATTCGATTCAAGTGATGCATGTGGCGGATGTGCAATC
GTCGCCGGGGAGTGTCGCGCAAGTGCGTGAGTCGGCCACGGCGCTTACGCGTTATGCCAAACAAAATAATGTGGCGGTAT
TTATTGTCGGCCACGTAACCAAAGATGGTACGTTGGCGGGACCTAAAGTTCTTGAACACATCATCGATTGCTCGATTCTG
CTTGATGGTGATACCGACAGTCGTTTTCGTACACTTCGTAGTCATAAAAACCGTTTTGGTGCGGTCAATGAACTCGGTGT
GTTTGCGATGACCGGACAAGGGATGCGTGAGGTGAGTAATCCATCGGCGATTTTCCTTTCTCGTGGAGAAGAAGCGGCAT
CTGGTAGCTCAGTGATGGTGGTGTGGGAAGGAACTCGCCCACTCTTAGTCGAGATTCAAGCGTTGGTCGATTACTCACAA
CTCGCTAACCCAAGACGCGTTGCGGTTGGCTTAGAACAAAACCGTCTCTCTTTATTACTGGCCGTGCTGCATAAACACGG
TGGTTTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTAGTCGGTGGCGTGAAAGTGACGGAGACCAGTGCAGATTTAG
CGCTACTCATGGCGTTATTGTCGAGTTTTCGTGATCGTCCGCTGCCAAAAGATGTCGTGGTTTTTGGTGAAGTCGGATTG
GCCGGAGAAATTCGTCCTGTACCCAGTGGTCAAGAGCGCCTTAACGAAGCCTTCAAACATGGTTTTAAGAAAGCGATTGT
GCCGATTGCCAATATGCCGAAAGGTGGTATTGAAGGTATGCAGATCCACGGTGTGAAAAAGCTTTCTGATGCGATCGCGG
CTTTTGATGAGCTGTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_25) (81-223)

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	43.818	100	0.441
radA	Streptococcus mitis NCTC 12261	45.327	93.45	0.424
radA	Streptococcus pneumoniae Rx1	45.327	93.45	0.424
radA	Streptococcus pneumoniae D39	45.327	93.45	0.424
radA	Streptococcus pneumoniae R6	45.327	93.45	0.424
radA	Streptococcus pneumoniae TIGR4	45.327	93.45	0.424
radA	Streptococcus mitis SK321	45.327	93.45	0.424