Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ACLRDL_RS10960 Genome accession   NZ_CP178387
Coordinates   2414768..2414893 (-) Length   41 a.a.
NCBI ID   WP_413084192.1    Uniprot ID   -
Organism   Vibrio cholerae isolate CTMA_1842     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2409768..2419893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLRDL_RS10950 (ACLRDL_10950) tfoS 2410288..2413536 (-) 3249 WP_413084091.1 AraC family transcriptional regulator Regulator
  ACLRDL_RS10955 (ACLRDL_10955) - 2413598..2414775 (+) 1178 WP_086010879.1 IS3-like element ISVch4 family transposase -
  ACLRDL_RS10960 (ACLRDL_10960) tfoS 2414768..2414893 (-) 126 WP_413084192.1 hypothetical protein Regulator
  ACLRDL_RS10965 (ACLRDL_10965) znuA 2415096..2415980 (-) 885 WP_000952844.1 zinc ABC transporter substrate-binding protein ZnuA -
  ACLRDL_RS10970 (ACLRDL_10970) znuC 2416064..2416852 (+) 789 WP_000996146.1 zinc ABC transporter ATP-binding protein ZnuC -
  ACLRDL_RS10975 (ACLRDL_10975) znuB 2416845..2417627 (+) 783 WP_000571524.1 zinc ABC transporter permease subunit ZnuB -
  ACLRDL_RS10980 (ACLRDL_10980) sucD 2417734..2418606 (-) 873 WP_000025475.1 succinate--CoA ligase subunit alpha -
  ACLRDL_RS10985 (ACLRDL_10985) sucC 2418606..2419772 (-) 1167 WP_001048578.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4675.71 Da        Isoelectric Point: 6.9673

>NTDB_id=971629 ACLRDL_RS10960 WP_413084192.1 2414768..2414893(-) (tfoS) [Vibrio cholerae isolate CTMA_1842]
MFRTLLYGCLLNILIPSLVLALDKSMSIFYPLPIQEHVVVN

Nucleotide


Download         Length: 126 bp        

>NTDB_id=971629 ACLRDL_RS10960 WP_413084192.1 2414768..2414893(-) (tfoS) [Vibrio cholerae isolate CTMA_1842]
GTGTTTCGCACATTGTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCCTTGGTATTGGCATTAGATAAATCTATGTC
TATTTTCTATCCTTTGCCCATTCAAGAGCATGTAGTGGTCAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

97.297

90.244

0.878

Multiple sequence alignment