Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   WOC66_RS13825 Genome accession   NZ_CP150743
Coordinates   2783320..2784294 (-) Length   324 a.a.
NCBI ID   WP_000697228.1    Uniprot ID   A0A0D3Q868
Organism   Staphylococcus aureus strain TUM22705     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2778320..2789294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WOC66_RS13785 (WOC66_13785) gcvT 2778821..2779912 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  WOC66_RS13790 (WOC66_13790) - 2780071..2780595 (-) 525 WP_001015117.1 shikimate kinase -
  WOC66_RS13795 (WOC66_13795) - 2780585..2780731 (-) 147 WP_001789879.1 hypothetical protein -
  WOC66_RS13800 (WOC66_13800) comGF 2780828..2781325 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  WOC66_RS13805 (WOC66_13805) comGE 2781243..2781542 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  WOC66_RS13810 (WOC66_13810) comGD 2781529..2781975 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  WOC66_RS13815 (WOC66_13815) comGC 2781953..2782264 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  WOC66_RS13820 (WOC66_13820) comGB 2782278..2783348 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  WOC66_RS13825 (WOC66_13825) comGA 2783320..2784294 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36865.01 Da        Isoelectric Point: 9.0399

>NTDB_id=971633 WOC66_RS13825 WP_000697228.1 2783320..2784294(-) (comGA) [Staphylococcus aureus strain TUM22705]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYLF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQPQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
HKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=971633 WOC66_RS13825 WP_000697228.1 2783320..2784294(-) (comGA) [Staphylococcus aureus strain TUM22705]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCTTTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACCACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATAAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
CATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3Q868

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.074

100

0.991
  comGA Staphylococcus aureus N315

99.074

100

0.991

Multiple sequence alignment