Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJX2R_RS35880 Genome accession   NZ_CP178360
Coordinates   8423330..8424952 (+) Length   540 a.a.
NCBI ID   WP_413103475.1    Uniprot ID   -
Organism   Streptomyces sp. Inha503     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8418330..8429952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJX2R_RS35850 (ACJX2R_35925) lepB 8419041..8420081 (+) 1041 Protein_7093 signal peptidase I -
  ACJX2R_RS35855 (ACJX2R_35930) lepB 8420029..8421114 (+) 1086 WP_413106021.1 signal peptidase I -
  ACJX2R_RS35860 (ACJX2R_35935) lepB 8421212..8421982 (+) 771 WP_413103472.1 signal peptidase I -
  ACJX2R_RS35865 (ACJX2R_35940) - 8421975..8422508 (+) 534 WP_413103473.1 NUDIX hydrolase -
  ACJX2R_RS35870 (ACJX2R_35945) - 8422548..8422856 (+) 309 WP_004944840.1 DUF2469 domain-containing protein -
  ACJX2R_RS35875 (ACJX2R_35950) - 8422971..8423330 (+) 360 WP_413103474.1 YraN family protein -
  ACJX2R_RS35880 (ACJX2R_35955) comM 8423330..8424952 (+) 1623 WP_413103475.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJX2R_RS35885 (ACJX2R_35960) dprA 8424952..8426361 (+) 1410 WP_413103476.1 DNA-processing protein DprA -
  ACJX2R_RS35890 (ACJX2R_35965) whiG 8426491..8427324 (+) 834 WP_262703915.1 RNA polymerase sigma factor WhiG -
  ACJX2R_RS35895 (ACJX2R_35970) - 8427418..8427957 (+) 540 WP_044581329.1 TetR/AcrR family transcriptional regulator -
  ACJX2R_RS35900 (ACJX2R_35975) - 8427911..8428567 (-) 657 WP_413103477.1 murein hydrolase activator EnvC family protein -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 56096.55 Da        Isoelectric Point: 6.5747

>NTDB_id=971455 ACJX2R_RS35880 WP_413103475.1 8423330..8424952(+) (comM) [Streptomyces sp. Inha503]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGAAERVDPREIADLMMIGELGLDGRVRPVRGVLPAVLAASEAGYRQVVVPEQTAAEAALVPGVSVLGVRS
LRQLIAVLTDEPVPEEEEPQELGRPDPMLAGLTVPGAGMGTGVAAVPGAGPGRPDLAEVAGQRAARTALEVAAAGGHHLF
LNGPPGAGKTMLAERLPGLLPPLTQQEALEVTAVHSVAGVLPPGQPLVETPPYCAPHHSATMAALVGGGNGLPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARSAGMMRMPARFLLMLAANPCPCGRHGLMGDVCECSPATVRRYQAR
LSGPLLDRVDLRVRVEAVSRTELTGARAGAESSASVAARVQEARERSAARLHGTPWRLNSEVPGHELRTRWQPSPGALRE
AERDMERGLLTARGLDRVLRVAWTVADLAGHDRPMAPDIAEALQLRTGISRGVPIPAGEC

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=971455 ACJX2R_RS35880 WP_413103475.1 8423330..8424952(+) (comM) [Streptomyces sp. Inha503]
ATGGGGTTCGCCCGCACCTGCTCGGTGGCGCTGGTCGGGGTCGAGGGCGTGGTGGTGGAGGTCCAGGCCGATCTGGAGCC
GGGAGTGGCCGCCTTCACCCTGGTCGGTTTGCCCGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTCCGCGCGGCCGTGG
TCAATTCCGGCGGTGAATGGCCGCAGAAGAAGCTCACGGTCGGGCTCAGCCCGGCATCCGTCCCCAAGGGCGGCAGCGGC
TTCGACCTTGCCGTGGCCTGTGCGGTGCTGGGTGCGGCCGAGCGGGTGGACCCACGTGAGATCGCCGATCTGATGATGAT
CGGGGAGCTGGGTCTCGACGGCCGGGTGCGGCCGGTCCGCGGGGTACTGCCCGCCGTGCTCGCCGCTTCCGAGGCGGGCT
ACCGCCAGGTCGTGGTCCCCGAGCAGACGGCGGCGGAGGCGGCCCTGGTGCCGGGCGTCTCGGTGCTGGGTGTGCGGAGC
CTGCGCCAGTTGATCGCGGTGCTGACGGATGAGCCGGTGCCCGAGGAGGAGGAGCCCCAGGAGCTGGGCCGTCCCGATCC
GATGCTGGCGGGGCTCACCGTGCCCGGCGCCGGTATGGGTACCGGTGTCGCCGCGGTGCCCGGGGCCGGGCCGGGGCGGC
CCGATCTGGCCGAGGTCGCCGGGCAGCGGGCCGCGCGCACCGCCCTGGAGGTCGCGGCCGCGGGCGGGCACCACCTCTTC
CTGAACGGGCCTCCAGGTGCCGGGAAGACCATGCTGGCCGAGCGGCTGCCCGGACTGCTGCCGCCGCTCACCCAGCAGGA
GGCCCTGGAGGTCACCGCGGTCCACTCGGTCGCCGGGGTCCTCCCACCGGGGCAGCCCCTGGTGGAGACCCCGCCGTACT
GCGCCCCGCACCACTCGGCGACCATGGCCGCGCTCGTCGGCGGGGGCAACGGCCTGCCGAGACCCGGCGCGGTCTCGCTC
GCCCACCGTGGAGTGCTCTTCCTGGACGAGGCTCCCGAGTTCAGCGGGAAGGCGCTGGACGCCCTGCGGCAGCCCCTGGA
GTCGGGGCATGTGGTGGTCGCCCGGTCCGCCGGGATGATGCGGATGCCGGCGCGCTTCCTGCTGATGCTGGCGGCCAACC
CCTGCCCTTGCGGGCGCCACGGTCTGATGGGCGACGTCTGCGAGTGCTCACCCGCCACGGTCCGGCGCTATCAGGCACGG
CTGTCCGGACCGCTGCTGGACCGGGTGGACCTGCGGGTCCGCGTCGAGGCGGTGAGCCGGACCGAGCTCACCGGGGCGCG
CGCCGGGGCGGAGAGCAGCGCGTCCGTCGCGGCCCGGGTCCAGGAGGCCCGGGAGCGGTCCGCCGCCCGGCTCCACGGCA
CCCCCTGGCGGCTGAACAGCGAGGTGCCGGGCCATGAGCTGCGCACCCGCTGGCAGCCGTCCCCCGGTGCGCTGCGCGAG
GCCGAGCGCGATATGGAGCGCGGGCTGCTCACCGCCCGGGGGCTCGACCGGGTGCTGAGGGTCGCCTGGACCGTCGCCGA
CCTGGCCGGACACGACCGGCCCATGGCGCCGGACATCGCCGAGGCGCTACAGCTGCGCACCGGGATCAGCCGTGGGGTGC
CGATCCCGGCGGGGGAGTGCTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(431-526)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

40.304

97.407

0.393
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.304

97.407

0.393
  comM Vibrio campbellii strain DS40M4

38.91

98.519

0.383
  comM Acinetobacter baylyi ADP1

39.279

97.593

0.383
  comM Legionella pneumophila strain ERS1305867

38.158

98.519

0.376
  comM Legionella pneumophila str. Paris

38.158

98.519

0.376
  comM Haemophilus influenzae Rd KW20

38.023

97.407

0.37
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

38.196

96.481

0.369
  comM Glaesserella parasuis strain SC1401

37.429

97.963

0.367