Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AACK08_RS04835 Genome accession   NZ_AP029004
Coordinates   1024236..1025309 (-) Length   357 a.a.
NCBI ID   WP_011000459.1    Uniprot ID   Q8Y236
Organism   Ralstonia pseudosolanacearum strain MAFF 211519     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1019236..1030309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK08_RS04800 (MAFF211519_09540) - 1019258..1019662 (+) 405 WP_011000453.1 polymer-forming cytoskeletal protein -
  AACK08_RS04805 (MAFF211519_09550) erpA 1019791..1020165 (+) 375 WP_003265486.1 iron-sulfur cluster insertion protein ErpA -
  AACK08_RS04810 (MAFF211519_09560) - 1020229..1021389 (-) 1161 WP_071507117.1 anhydro-N-acetylmuramic acid kinase -
  AACK08_RS04815 (MAFF211519_09570) tyrS 1021564..1022835 (+) 1272 WP_016724018.1 tyrosine--tRNA ligase -
  AACK08_RS04820 (MAFF211519_09580) dtd 1022832..1023332 (+) 501 WP_011000456.1 D-aminoacyl-tRNA deacylase -
  AACK08_RS04825 (MAFF211519_09590) - 1023350..1023481 (+) 132 WP_058907487.1 hypothetical protein -
  AACK08_RS04830 (MAFF211519_09600) - 1023481..1024164 (+) 684 WP_011000458.1 histidine phosphatase family protein -
  AACK08_RS04835 (MAFF211519_09610) ruvB 1024236..1025309 (-) 1074 WP_011000459.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AACK08_RS04840 (MAFF211519_09620) ruvA 1025373..1025954 (-) 582 WP_019717529.1 Holliday junction branch migration protein RuvA -
  AACK08_RS04845 (MAFF211519_09630) - 1026006..1027142 (-) 1137 WP_020831261.1 glycerophosphodiester phosphodiesterase -
  AACK08_RS04850 (MAFF211519_09640) ruvC 1027238..1027783 (-) 546 WP_016726644.1 crossover junction endodeoxyribonuclease RuvC -
  AACK08_RS04855 (MAFF211519_09650) purH 1027872..1029446 (-) 1575 WP_338929848.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  AACK08_RS04860 (MAFF211519_09660) - 1029536..1029769 (-) 234 WP_011000464.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 39058.85 Da        Isoelectric Point: 5.5347

>NTDB_id=97068 AACK08_RS04835 WP_011000459.1 1024236..1025309(-) (ruvB) [Ralstonia pseudosolanacearum strain MAFF 211519]
MIETDKLAAKAVSAERLISASPASPNEEAFERALRPKLLDEYVGQEKVRGQLDIFMTAAKKRREALDHVLLFGPPGLGKT
TLAHIIAREMGVNLRQTSGPVLERPGDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTPTELARIVTRSAGLLDARIAEDGALEIAKRSRGTPRIANRLLRR
VRDYAEVKADGVITRAVADAALAMLDVDAVGFDLMDRKLLEAILHKFNGGPVGIDNLAAAIGEERDTIEDVLEPYLIQQG
YLQRTPRGRVATASAYQHFGLGAPKTGPARDLWDNNA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=97068 AACK08_RS04835 WP_011000459.1 1024236..1025309(-) (ruvB) [Ralstonia pseudosolanacearum strain MAFF 211519]
ATGATCGAAACCGACAAGCTCGCCGCCAAGGCCGTCTCCGCCGAACGCCTGATCTCGGCCTCGCCCGCCTCCCCCAACGA
GGAGGCATTCGAGCGCGCGCTGCGCCCCAAGCTGCTCGACGAATACGTCGGCCAGGAAAAGGTGCGCGGCCAGCTCGATA
TCTTCATGACGGCGGCCAAGAAGCGCCGCGAGGCGCTCGACCACGTGCTGCTGTTCGGCCCGCCGGGCCTGGGCAAGACG
ACGCTGGCGCACATCATCGCCCGCGAGATGGGCGTCAACCTGCGCCAGACCTCGGGCCCCGTGCTGGAGCGCCCGGGCGA
CCTGGCCGCGCTGCTGACCAACCTCGAAGCCAACGACGTCCTCTTCATCGACGAGATCCATCGACTCTCGCCGGTGGTGG
AGGAAATCCTGTATCCGGCGCTCGAGGACTACCAGATCGACATCATGATCGGCGAAGGCCCGGCAGCCCGCTCGGTCAAG
CTCGATCTGCAGCCGTTCACGCTGGTGGGCGCCACCACGCGCGCCGGCATGCTGACCAACCCGCTGCGCGACCGCTTCGG
CATCGTCGCCCGGCTCGAGTTCTATACGCCGACGGAGCTCGCGCGCATCGTCACGCGCTCTGCCGGCCTGCTCGACGCGC
GCATCGCCGAAGACGGCGCGCTGGAGATCGCCAAGCGCTCGCGCGGCACGCCCCGCATCGCCAACCGCCTGCTGCGCCGC
GTGCGCGACTACGCTGAAGTGAAAGCCGACGGCGTCATCACCCGCGCGGTGGCCGACGCGGCGCTGGCGATGCTCGACGT
GGATGCGGTCGGCTTCGACCTGATGGACCGCAAGCTGCTGGAAGCCATCCTGCACAAGTTCAACGGCGGCCCGGTCGGCA
TCGACAACCTGGCCGCCGCCATCGGCGAGGAGCGCGACACCATCGAAGACGTGCTCGAGCCCTACCTGATCCAGCAGGGC
TACCTGCAGCGCACGCCGCGCGGGCGCGTCGCCACGGCATCGGCCTACCAGCACTTCGGGCTAGGCGCGCCGAAGACCGG
TCCGGCGCGCGACCTGTGGGACAACAACGCCTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(34-192)

RuvB AAA lid domain (AAA_lid_4)

(195-268)

RuvB C-terminal winged helix domain (WHD_RuvB)

(270-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y236

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.538

92.717

0.58
  ruvB Streptococcus pneumoniae TIGR4

60.635

88.235

0.535
  ruvB Streptococcus pneumoniae R6

60.635

88.235

0.535
  ruvB Streptococcus pneumoniae D39

60.635

88.235

0.535
  ruvB Synechocystis sp. PCC 6803

51.895

96.078

0.499
  ruvB Helicobacter pylori 26695

55.7

85.994

0.479

Multiple sequence alignment