Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACK08_RS04010 Genome accession   NZ_AP029004
Coordinates   860065..861597 (-) Length   510 a.a.
NCBI ID   WP_058907452.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain MAFF 211519     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 855065..866597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK08_RS03985 (MAFF211519_07930) - 855936..856487 (-) 552 WP_029240201.1 TlpA disulfide reductase family protein -
  AACK08_RS03990 (MAFF211519_07940) - 856591..857106 (-) 516 WP_016724225.1 O-acetyl-ADP-ribose deacetylase -
  AACK08_RS03995 (MAFF211519_07950) - 857206..857766 (+) 561 WP_058907449.1 hypothetical protein -
  AACK08_RS04000 (MAFF211519_07960) - 857908..858384 (-) 477 WP_058907450.1 hypothetical protein -
  AACK08_RS04005 (MAFF211519_07970) - 858431..859921 (-) 1491 WP_071507707.1 tyrosinase family protein -
  AACK08_RS04010 (MAFF211519_07980) comM 860065..861597 (-) 1533 WP_058907452.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACK08_RS04015 (MAFF211519_07990) - 861807..862322 (-) 516 WP_011000303.1 hypothetical protein -
  AACK08_RS04020 (MAFF211519_08000) - 862602..862865 (-) 264 WP_011000304.1 accessory factor UbiK family protein -
  AACK08_RS04025 (MAFF211519_08010) - 863415..864221 (+) 807 WP_011000305.1 TorF family putative porin -
  AACK08_RS04030 (MAFF211519_08020) - 864269..864607 (+) 339 WP_028852549.1 P-II family nitrogen regulator -
  AACK08_RS04035 (MAFF211519_08030) amt 864640..866190 (+) 1551 WP_020831101.1 ammonium transporter -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 54584.29 Da        Isoelectric Point: 7.8372

>NTDB_id=97061 AACK08_RS04010 WP_058907452.1 860065..861597(-) (comM) [Ralstonia pseudosolanacearum strain MAFF 211519]
MSLAVLRSRALAGIDAPAVSVEVHLANGLPSFTIVGLPDTEVKESKDRVRAAIQNSRFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASRQIPHTHLDAHEFAGELSLSGDLRPIRGALAMAYALSRQPGPPDGDAPRPRAFVLPTENAAEAALVS
GTRVLPAHTLIEVCDHLSTPDRKLASAVPAPIGASVHYPDLADVRGQPQARRALEVAAAGGHSMLMIGPPGTGKSMLAQR
FPGLLPDMSDDEALSAAAVMSLTTRGFDAQRWKVRPFRAPHHTASAVAMVGGGNTPRPGEISLAHQGVLFLDELPEFERR
VLEVLREPLETGHITISRAAHQTDFPASFQLIAAMNPCPCGYRGHPLRACRCTPDQVDRYQARLSGPLLDRIDVQIEVPT
PSQEELLDGPPGEPTAAVAARVAAAHARQRARQGKRNALLAGHEIDLHCTRTDAADSLLRQAMTRFSWSARAYARVLKLA
RTIADLAGDAAVDTAHVGEAIQYRRGVKAD

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=97061 AACK08_RS04010 WP_058907452.1 860065..861597(-) (comM) [Ralstonia pseudosolanacearum strain MAFF 211519]
ATGAGTCTTGCCGTCCTGCGTTCACGGGCGCTGGCCGGCATCGACGCGCCGGCGGTATCGGTGGAGGTGCACCTGGCCAA
CGGACTGCCCTCCTTCACCATCGTCGGTCTGCCGGACACGGAGGTGAAGGAAAGCAAGGACCGCGTGCGCGCGGCCATCC
AGAACAGCCGCTTCGAGTTTCCCGCGCGGCGCATCACCGTCAACCTGGCGCCGGCAGATCTGCCGAAAGAGTCGGGCCGC
TTCGACCTGCCGATCGCCCTGGGCATCCTCGCCGCCAGCCGGCAGATTCCGCACACGCACCTGGACGCGCACGAGTTTGC
AGGAGAGCTGTCGCTGTCGGGCGACCTGCGGCCGATCCGTGGCGCGCTGGCCATGGCATATGCGCTGTCGCGCCAGCCGG
GGCCGCCCGATGGCGACGCACCGCGCCCTCGCGCCTTTGTCCTGCCCACCGAGAATGCCGCCGAGGCGGCGCTGGTCAGC
GGCACCCGGGTGCTGCCGGCGCACACGCTGATCGAGGTCTGCGACCATCTGTCCACGCCCGACCGCAAGCTGGCGAGCGC
CGTGCCCGCCCCAATCGGCGCCAGCGTCCACTATCCCGACCTGGCCGACGTACGCGGCCAGCCGCAGGCGCGCCGCGCCC
TGGAAGTGGCAGCGGCCGGTGGCCACTCGATGCTGATGATCGGTCCGCCCGGCACCGGCAAGTCCATGCTGGCCCAGCGC
TTTCCCGGCTTGCTGCCCGACATGAGCGACGACGAGGCGCTCTCCGCTGCCGCGGTGATGAGCCTGACCACGCGCGGTTT
CGATGCGCAGCGCTGGAAGGTGCGTCCGTTCCGCGCGCCGCACCACACGGCGTCGGCGGTGGCGATGGTGGGAGGCGGCA
ACACGCCGCGGCCGGGCGAGATTTCGCTGGCGCATCAGGGCGTACTGTTCCTCGATGAATTGCCCGAATTCGAGCGCCGC
GTGCTGGAGGTCCTGCGGGAGCCGCTGGAAACCGGCCACATCACCATCTCCCGCGCGGCGCACCAGACGGATTTTCCCGC
CAGTTTCCAGCTGATCGCGGCCATGAATCCGTGCCCGTGCGGCTATCGCGGGCATCCATTGCGCGCGTGCCGGTGCACGC
CGGACCAGGTGGATCGCTATCAGGCCCGCCTCTCCGGCCCGCTGCTCGATCGCATCGACGTGCAGATCGAGGTGCCGACG
CCATCGCAGGAGGAATTGCTCGATGGCCCGCCCGGCGAGCCGACCGCCGCCGTGGCCGCGCGCGTGGCGGCGGCGCATGC
ACGGCAACGGGCGCGCCAGGGCAAACGCAACGCACTGCTGGCCGGGCACGAGATCGATCTGCATTGCACGCGCACCGACG
CTGCCGACAGCCTGCTGCGCCAGGCGATGACGCGCTTCTCTTGGTCGGCCCGCGCCTATGCGCGCGTGCTCAAGCTCGCC
CGCACCATCGCCGACCTGGCGGGCGACGCGGCTGTCGATACGGCGCACGTTGGCGAAGCCATCCAATACCGGCGCGGCGT
GAAAGCAGACTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

53.755

99.216

0.533
  comM Vibrio cholerae strain A1552

53.755

99.216

0.533
  comM Vibrio campbellii strain DS40M4

52.673

99.02

0.522
  comM Legionella pneumophila str. Paris

51.373

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.373

100

0.514
  comM Glaesserella parasuis strain SC1401

51.373

100

0.514
  comM Haemophilus influenzae Rd KW20

49.903

100

0.504
  comM Acinetobacter baylyi ADP1

49.216

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.578

100

0.427

Multiple sequence alignment