Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NST25_RS15340 Genome accession   NZ_CP150306
Coordinates   3524390..3526141 (-) Length   583 a.a.
NCBI ID   WP_076130605.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL E2-0190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519390..3531141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST25_RS15325 (NST25_15325) - 3519939..3520874 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NST25_RS15330 (NST25_15330) - 3520965..3522527 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  NST25_RS15335 (NST25_15335) rcrQ 3522630..3524390 (-) 1761 WP_036677200.1 ABC transporter ATP-binding protein Regulator
  NST25_RS15340 (NST25_15340) rcrP 3524390..3526141 (-) 1752 WP_076130605.1 ABC transporter ATP-binding protein Regulator
  NST25_RS15345 (NST25_15345) - 3526261..3527316 (-) 1056 WP_081386330.1 HAMP domain-containing sensor histidine kinase -
  NST25_RS15350 (NST25_15350) - 3527313..3527987 (-) 675 WP_076184972.1 response regulator transcription factor -
  NST25_RS15355 (NST25_15355) - 3528313..3529278 (+) 966 WP_076302104.1 aldo/keto reductase -
  NST25_RS15360 (NST25_15360) - 3529315..3530166 (+) 852 WP_076130608.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63914.40 Da        Isoelectric Point: 7.2156

>NTDB_id=970183 NST25_RS15340 WP_076130605.1 3524390..3526141(-) (rcrP) [Paenibacillus sp. FSL E2-0190]
MVTILKYLKPKEWALIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSKANRLGEVEFKNVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=970183 NST25_RS15340 WP_076130605.1 3524390..3526141(-) (rcrP) [Paenibacillus sp. FSL E2-0190]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGGCCCTAATCGGTATCAGCATCCTGTTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGAAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTCGGCAGCTTAGCTACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCCAAATTGTTTGATAAGGTACAGTCTTTCTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACAAATGACATTACACAAGTGCAAATGCTGATTGTCATCGGTCTGC
AACTCCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTAGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGCCTTCGTGTCATTCGTGCGTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTCGCCAATAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTGATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCAATGCAGGTGGTTATGGCATTTA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCCAAGGCAAATCGGTTGGGTGAGGTCGAATTCAAAAATGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAAGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTAGCCTTTATCGGTT
CAACCGGATGCGGAAAAAGTACCGTCGTGAACCTGATTCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAT
GGAATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGATAATGGCAGTGATCTGTCCTCGGATGTTGTTGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAACAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTAATCTTCGACGATTCCTTCTCAGC
GCTCGATTATAAGACGGATCGCAAATTGCGAAGTGAATTGAAGAAAAAATCCAGCGGTACAACGATACTAATCGTTGCCC
AACGGATCGGTACAATCAAAGATGCAGACAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.532

Multiple sequence alignment