Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NST93_RS14130 | Genome accession | NZ_CP150301 |
| Coordinates | 2779214..2779714 (-) | Length | 166 a.a. |
| NCBI ID | WP_405098109.1 | Uniprot ID | - |
| Organism | Oceanobacillus sp. FSL H7-0719 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2767720..2845873 | 2779214..2779714 | within | 0 |
Gene organization within MGE regions
Location: 2767720..2845873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST93_RS14075 (NST93_14015) | - | 2767720..2768091 (-) | 372 | WP_405098087.1 | hypothetical protein | - |
| NST93_RS14080 (NST93_14020) | dnaB | 2768930..2770306 (-) | 1377 | WP_405098089.1 | replicative DNA helicase | - |
| NST93_RS14085 (NST93_14025) | rplI | 2770506..2770955 (-) | 450 | WP_405098091.1 | 50S ribosomal protein L9 | - |
| NST93_RS14090 (NST93_14030) | - | 2770952..2772928 (-) | 1977 | WP_405098093.1 | DHH family phosphoesterase | - |
| NST93_RS14095 (NST93_14035) | - | 2772969..2773916 (-) | 948 | WP_405098095.1 | YybS family protein | - |
| NST93_RS14100 (NST93_14040) | - | 2774241..2774735 (+) | 495 | WP_405098097.1 | hypothetical protein | - |
| NST93_RS14105 (NST93_14045) | nrdF | 2774790..2775758 (-) | 969 | WP_405098099.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| NST93_RS14110 (NST93_14050) | nrdE | 2775746..2777839 (-) | 2094 | WP_405098101.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| NST93_RS14115 (NST93_14055) | nrdI | 2777836..2778195 (-) | 360 | WP_405098103.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| NST93_RS14120 (NST93_14060) | - | 2778192..2778416 (-) | 225 | WP_405098105.1 | glutaredoxin family protein | - |
| NST93_RS14125 (NST93_14065) | rpsR | 2778864..2779100 (-) | 237 | WP_405098107.1 | 30S ribosomal protein S18 | - |
| NST93_RS14130 (NST93_14070) | ssbA | 2779214..2779714 (-) | 501 | WP_405098109.1 | single-stranded DNA-binding protein | Machinery gene |
| NST93_RS14135 (NST93_14075) | rpsF | 2779730..2780017 (-) | 288 | WP_405098111.1 | 30S ribosomal protein S6 | - |
| NST93_RS14140 (NST93_14080) | ychF | 2780218..2781318 (-) | 1101 | WP_405098113.1 | redox-regulated ATPase YchF | - |
| NST93_RS14145 (NST93_14085) | - | 2781769..2781972 (-) | 204 | WP_405098115.1 | DUF951 domain-containing protein | - |
| NST93_RS14150 (NST93_14090) | - | 2782115..2783122 (-) | 1008 | WP_405098117.1 | hypothetical protein | - |
| NST93_RS14155 (NST93_14095) | yyaC | 2783202..2783816 (+) | 615 | WP_405098119.1 | spore protease YyaC | - |
| NST93_RS14160 (NST93_14100) | - | 2783870..2784574 (-) | 705 | WP_405103898.1 | DUF554 domain-containing protein | - |
| NST93_RS14165 (NST93_14105) | - | 2784688..2785524 (-) | 837 | WP_405098121.1 | ParB/RepB/Spo0J family partition protein | - |
| NST93_RS14170 (NST93_14110) | - | 2785505..2786278 (-) | 774 | WP_405098123.1 | ParA family protein | - |
| NST93_RS14175 (NST93_14115) | noc | 2786498..2787361 (-) | 864 | WP_405098125.1 | nucleoid occlusion protein | - |
| NST93_RS14180 (NST93_14120) | rsmG | 2787602..2788318 (-) | 717 | WP_405098127.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| NST93_RS14185 (NST93_14125) | mnmG | 2788374..2790257 (-) | 1884 | WP_405103900.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
| NST93_RS14190 (NST93_14130) | mnmE | 2790299..2791675 (-) | 1377 | WP_405098129.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| NST93_RS14195 (NST93_14135) | jag | 2792305..2792919 (-) | 615 | WP_405098131.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| NST93_RS14200 (NST93_14140) | yidC | 2792916..2793668 (-) | 753 | WP_405103902.1 | membrane protein insertase YidC | - |
| NST93_RS14205 (NST93_14145) | rnpA | 2793780..2794124 (-) | 345 | WP_405098133.1 | ribonuclease P protein component | - |
| NST93_RS14210 (NST93_14150) | rpmH | 2794245..2794379 (-) | 135 | WP_205138238.1 | 50S ribosomal protein L34 | - |
| NST93_RS14215 (NST93_14155) | dnaA | 2795342..2796685 (+) | 1344 | WP_405098136.1 | chromosomal replication initiator protein DnaA | - |
| NST93_RS14220 (NST93_14160) | dnaN | 2796896..2798032 (+) | 1137 | WP_405098138.1 | DNA polymerase III subunit beta | - |
| NST93_RS14225 (NST93_14165) | yaaA | 2798351..2798569 (+) | 219 | WP_405098140.1 | S4 domain-containing protein YaaA | - |
| NST93_RS14230 (NST93_14170) | recF | 2798575..2799696 (+) | 1122 | WP_405098142.1 | DNA replication/repair protein RecF | - |
| NST93_RS14235 (NST93_14175) | remB | 2799719..2799991 (+) | 273 | WP_405098144.1 | extracellular matrix regulator RemB | - |
| NST93_RS14240 (NST93_14180) | gyrB | 2800073..2801998 (+) | 1926 | WP_405098146.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| NST93_RS14245 (NST93_14185) | gyrA | 2802117..2804618 (+) | 2502 | WP_405098148.1 | DNA gyrase subunit A | - |
| NST93_RS14250 (NST93_14190) | - | 2804691..2805788 (+) | 1098 | WP_405103904.1 | HD-GYP domain-containing protein | - |
| NST93_RS14255 (NST93_14195) | - | 2805840..2807054 (+) | 1215 | WP_405098150.1 | carboxylate--amine ligase | - |
| NST93_RS14260 (NST93_14200) | guaB | 2807207..2808682 (+) | 1476 | WP_405098152.1 | IMP dehydrogenase | - |
| NST93_RS14265 (NST93_14205) | - | 2808980..2810320 (+) | 1341 | WP_405098154.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| NST93_RS14270 (NST93_14210) | serS | 2810714..2811982 (+) | 1269 | WP_405098156.1 | serine--tRNA ligase | - |
| NST93_RS14275 (NST93_14215) | - | 2812248..2813972 (+) | 1725 | WP_405098158.1 | ABC transporter ATP-binding protein | - |
| NST93_RS14280 (NST93_14220) | - | 2813969..2815825 (+) | 1857 | WP_405098160.1 | ABC transporter ATP-binding protein | - |
| NST93_RS14290 (NST93_14230) | proC | 2816630..2817451 (+) | 822 | WP_405098162.1 | pyrroline-5-carboxylate reductase | - |
| NST93_RS14300 (NST93_14240) | - | 2817783..2818592 (+) | 810 | WP_405098164.1 | MBL fold metallo-hydrolase | - |
| NST93_RS14305 (NST93_14245) | acsA | 2818727..2820442 (+) | 1716 | WP_405098166.1 | acetate--CoA ligase | - |
| NST93_RS14310 (NST93_14250) | - | 2820522..2821049 (+) | 528 | WP_405098168.1 | hypothetical protein | - |
| NST93_RS14315 (NST93_14255) | - | 2821121..2821636 (+) | 516 | WP_405098170.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| NST93_RS14320 (NST93_14260) | - | 2821692..2822228 (-) | 537 | WP_405098172.1 | isochorismatase family cysteine hydrolase | - |
| NST93_RS14325 (NST93_14265) | tadA | 2822328..2822801 (+) | 474 | WP_405098174.1 | tRNA adenosine(34) deaminase TadA | - |
| NST93_RS14335 (NST93_14275) | dnaX | 2823440..2825134 (+) | 1695 | WP_405098176.1 | DNA polymerase III subunit gamma/tau | - |
| NST93_RS14340 (NST93_14280) | - | 2825183..2825497 (+) | 315 | WP_405098178.1 | YbaB/EbfC family nucleoid-associated protein | - |
| NST93_RS14345 (NST93_14285) | recR | 2825781..2826377 (+) | 597 | WP_405098180.1 | recombination mediator RecR | - |
| NST93_RS14350 (NST93_14290) | - | 2826443..2826655 (+) | 213 | WP_405098182.1 | YaaL family protein | - |
| NST93_RS14355 (NST93_14295) | - | 2826752..2827024 (+) | 273 | WP_405098184.1 | pro-sigmaK processing inhibitor BofA family protein | - |
| NST93_RS14360 (NST93_14300) | - | 2827213..2827401 (+) | 189 | WP_405098186.1 | sigma factor G inhibitor Gin | - |
| NST93_RS14365 (NST93_14305) | - | 2827693..2829108 (+) | 1416 | WP_405098188.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| NST93_RS14370 (NST93_14310) | tmk | 2829122..2829775 (+) | 654 | WP_405098190.1 | dTMP kinase | - |
| NST93_RS14375 (NST93_14315) | - | 2829772..2830101 (+) | 330 | WP_405098192.1 | cyclic-di-AMP receptor | - |
| NST93_RS14380 (NST93_14320) | - | 2830161..2830595 (+) | 435 | WP_405098194.1 | YaaR family protein | - |
| NST93_RS14385 (NST93_14325) | holB | 2830616..2831605 (+) | 990 | WP_405098196.1 | DNA polymerase III subunit delta' | - |
| NST93_RS14390 (NST93_14330) | - | 2831613..2832437 (+) | 825 | WP_405098198.1 | stage 0 sporulation family protein | - |
| NST93_RS14395 (NST93_14335) | yabA | 2832452..2832805 (+) | 354 | WP_405098200.1 | DNA replication initiation control protein YabA | - |
| NST93_RS14400 (NST93_14340) | - | 2832965..2833708 (+) | 744 | WP_405098202.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| NST93_RS14405 (NST93_14345) | - | 2833725..2833967 (+) | 243 | WP_405098204.1 | GIY-YIG nuclease family protein | - |
| NST93_RS14410 (NST93_14350) | rsmI | 2833964..2834845 (+) | 882 | WP_405098206.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| NST93_RS14415 (NST93_14355) | - | 2834956..2835231 (-) | 276 | WP_405098208.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| NST93_RS14420 (NST93_14360) | metG | 2835965..2837971 (+) | 2007 | WP_405098210.1 | methionine--tRNA ligase | - |
| NST93_RS14425 (NST93_14365) | - | 2838062..2838838 (+) | 777 | WP_405098212.1 | TatD family hydrolase | - |
| NST93_RS14430 (NST93_14370) | - | 2838892..2839494 (+) | 603 | WP_405098214.1 | short chain dehydrogenase | - |
| NST93_RS14435 (NST93_14375) | - | 2839601..2839993 (-) | 393 | WP_405098216.1 | hypothetical protein | - |
| NST93_RS14440 (NST93_14380) | - | 2840491..2841705 (+) | 1215 | WP_405098218.1 | ubiquitin-like domain-containing protein | - |
| NST93_RS14445 (NST93_14385) | rnmV | 2841787..2842344 (+) | 558 | WP_405098220.1 | ribonuclease M5 | - |
| NST93_RS14450 (NST93_14390) | rsmA | 2842347..2843234 (+) | 888 | WP_405098222.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| NST93_RS14455 (NST93_14395) | - | 2843564..2843977 (+) | 414 | WP_405098224.1 | NUDIX hydrolase | - |
| NST93_RS14460 (NST93_14400) | - | 2844012..2844407 (+) | 396 | WP_405098226.1 | HIT family protein | - |
| NST93_RS14465 (NST93_14405) | - | 2844412..2844876 (+) | 465 | WP_405098228.1 | GNAT family N-acetyltransferase | - |
| NST93_RS14470 (NST93_14410) | - | 2844986..2845873 (+) | 888 | WP_405098231.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18623.23 Da Isoelectric Point: 4.5673
>NTDB_id=970006 NST93_RS14130 WP_405098109.1 2779214..2779714(-) (ssbA) [Oceanobacillus sp. FSL H7-0719]
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGEREADFINGVVWRRQAENLANYMKKGNLIGVDGRIQTR
NYEGQDGKTVYVTEVVADSIQFLETKGASGGQGAGPSGYQQNQNQNQYQNQNQFQPNQNQNQNQSNDDPFRNNGEPIDIS
DDDLPF
MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGEREADFINGVVWRRQAENLANYMKKGNLIGVDGRIQTR
NYEGQDGKTVYVTEVVADSIQFLETKGASGGQGAGPSGYQQNQNQNQYQNQNQFQPNQNQNQNQSNDDPFRNNGEPIDIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=970006 NST93_RS14130 WP_405098109.1 2779214..2779714(-) (ssbA) [Oceanobacillus sp. FSL H7-0719]
ATGTTAAATCGTGTCGTATTAGTTGGCAGGTTAACGAGGGATCCTGATTTACGTTATACACCGAATGGAGTAGCGGTAGC
TAACTTCAATATCGCAGTTAATCGTCCTTTTTCAAATCAGCAAGGTGAACGTGAGGCTGATTTTATCAATGGTGTCGTAT
GGCGCCGTCAAGCTGAAAACCTGGCTAATTATATGAAAAAAGGTAATTTAATTGGTGTTGATGGTCGTATACAAACACGT
AATTATGAAGGTCAGGATGGCAAGACCGTTTATGTAACAGAAGTTGTTGCTGACAGTATTCAATTCCTGGAAACAAAAGG
TGCTTCAGGTGGACAAGGAGCAGGACCATCAGGATACCAGCAAAATCAAAATCAGAACCAGTATCAAAACCAAAATCAAT
TCCAGCCAAATCAGAATCAGAACCAGAACCAATCAAATGATGATCCATTTAGAAATAATGGAGAGCCAATTGATATTTCA
GATGATGATTTGCCGTTCTAA
ATGTTAAATCGTGTCGTATTAGTTGGCAGGTTAACGAGGGATCCTGATTTACGTTATACACCGAATGGAGTAGCGGTAGC
TAACTTCAATATCGCAGTTAATCGTCCTTTTTCAAATCAGCAAGGTGAACGTGAGGCTGATTTTATCAATGGTGTCGTAT
GGCGCCGTCAAGCTGAAAACCTGGCTAATTATATGAAAAAAGGTAATTTAATTGGTGTTGATGGTCGTATACAAACACGT
AATTATGAAGGTCAGGATGGCAAGACCGTTTATGTAACAGAAGTTGTTGCTGACAGTATTCAATTCCTGGAAACAAAAGG
TGCTTCAGGTGGACAAGGAGCAGGACCATCAGGATACCAGCAAAATCAAAATCAGAACCAGTATCAAAACCAAAATCAAT
TCCAGCCAAATCAGAATCAGAACCAGAACCAATCAAATGATGATCCATTTAGAAATAATGGAGAGCCAATTGATATTTCA
GATGATGATTTGCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
63.636 |
100 |
0.675 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.382 |
100 |
0.608 |
| ssb | Glaesserella parasuis strain SC1401 |
35.754 |
100 |
0.386 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
63.855 |
0.38 |
| ssb | Neisseria meningitidis MC58 |
34.884 |
100 |
0.361 |
| ssb | Neisseria gonorrhoeae MS11 |
34.884 |
100 |
0.361 |