Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   NYE32_RS07675 Genome accession   NZ_CP150201
Coordinates   1703308..1705548 (-) Length   746 a.a.
NCBI ID   WP_073689617.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1698308..1710548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS07655 (NYE32_07655) - 1699176..1700036 (-) 861 WP_004183173.1 methionyl aminopeptidase -
  NYE32_RS07660 (NYE32_07660) spxR 1700076..1701356 (-) 1281 WP_037598368.1 CBS-HotDog domain-containing transcription factor SpxR -
  NYE32_RS07665 (NYE32_07665) - 1701349..1701894 (-) 546 WP_073689615.1 GNAT family N-acetyltransferase -
  NYE32_RS07670 (NYE32_07670) - 1701960..1703222 (-) 1263 WP_073689616.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NYE32_RS07675 (NYE32_07675) comEC/celB 1703308..1705548 (-) 2241 WP_073689617.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NYE32_RS07680 (NYE32_07680) comEA 1705538..1706233 (-) 696 WP_073689618.1 helix-hairpin-helix domain-containing protein Machinery gene
  NYE32_RS07685 (NYE32_07685) - 1706341..1707096 (-) 756 WP_073689619.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NYE32_RS07690 (NYE32_07690) - 1707226..1708161 (+) 936 WP_049545587.1 polysaccharide deacetylase family protein -
  NYE32_RS07695 (NYE32_07695) - 1708211..1708975 (+) 765 WP_049545588.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NYE32_RS07700 (NYE32_07700) - 1708979..1709248 (+) 270 WP_008535312.1 GIY-YIG nuclease family protein -

Sequence


Protein


Download         Length: 746 a.a.        Molecular weight: 84443.19 Da        Isoelectric Point: 9.6359

>NTDB_id=966182 NYE32_RS07675 WP_073689617.1 1703308..1705548(-) (comEC/celB) [Streptococcus sp. FSL R7-0248]
MWLKKAPINLFSLSLLIAALYFTIFVTNVYAIGTFVFLMVCFLKHHWKNKTALKLVGLVGSFFLVYFLFLHHRASIQDKQ
APAEINQVTLIADTLSVNGEQLSAIGKAKGQNYQVFYRLKSEKEQHFFKTTSQTLVLKGKITLIPATGQRNFQGFNYQSY
LASQGIYRIAQIERLDQVVPQKSLSPLAFFHQLRRRALVHIQTHFPSPMRHYMTGLLFGYLDKEFGEQSQLYTSLGIIHL
FALSGMQVGFFLGWFRYGLLRLGLPKDYLFIVLLPFSLCYGLMTGWTASVLRSLVQSLLAEFDIKKLDNMGITLLLLFLL
LPHFLLTVGGVLSCSYAFLLCLFDFEDLSSLKKSIYTSLVLSLGILPFLTYYYGTFQPVSLILTTIFSIVFDSFLLPVLT
VFFALSGLVIFSQINPLFEWMESFLTWIQSWIGQPLILGKPSLFQFGLMIAVLILLFDFWKKPQFRICLLMIFGLLMVWV
KHPLTNEVTVVDVGQGDSIFLRSMKGETILIDVGGKVTFGAKEKWQESSQTSNAEKTLIPYLQARGVSQIDYLVLTHTDT
DHIGDLEEVAKCFKIKEICVSQGALTKPSFVKRLRTIKCPVHTLKAGDKLPMMGSNLQVLYPNKVGDGGNNDSIVLYGKL
LGSSFLFTGDLEKEGEEELMVSYPTLRASVLKAGHHGSKGSSSEAFLDQLHPSLALVSAGENNRYKHPNDETIERFKQRH
IKILRTDKDGAIRFKGWFKWSSETVR

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=966182 NYE32_RS07675 WP_073689617.1 1703308..1705548(-) (comEC/celB) [Streptococcus sp. FSL R7-0248]
ATGTGGCTTAAAAAAGCTCCAATCAATCTTTTTTCCTTGTCTCTTTTAATAGCTGCCCTTTATTTTACGATTTTTGTCAC
TAATGTTTACGCTATTGGGACTTTTGTCTTTCTTATGGTCTGTTTTTTGAAGCATCATTGGAAGAATAAGACAGCCCTAA
AGTTGGTGGGACTTGTAGGTAGTTTCTTTTTGGTCTACTTTTTATTCTTGCACCACAGAGCTAGCATACAAGATAAACAA
GCCCCTGCTGAAATCAATCAGGTGACTCTGATTGCTGATACGCTATCGGTTAATGGTGAGCAATTATCCGCTATCGGTAA
GGCCAAGGGACAAAACTATCAGGTCTTTTACCGACTCAAATCTGAGAAGGAGCAGCATTTTTTCAAGACTACTAGTCAAA
CGCTAGTATTAAAAGGGAAAATTACGTTAATCCCAGCAACTGGTCAACGTAATTTTCAAGGGTTTAATTATCAGTCTTAT
CTTGCCAGTCAAGGTATTTATCGAATCGCTCAGATTGAGCGCTTGGACCAAGTGGTACCTCAAAAATCTCTATCTCCCCT
AGCTTTTTTCCATCAACTGAGGAGGAGGGCTTTGGTTCATATCCAGACGCACTTTCCTAGTCCTATGAGACACTATATGA
CAGGCCTGCTCTTTGGGTATTTGGATAAGGAGTTCGGTGAGCAGAGCCAGCTTTACACAAGTCTAGGTATTATTCATCTA
TTCGCACTTTCGGGGATGCAAGTGGGCTTTTTTCTGGGATGGTTTCGCTACGGTCTCCTACGCTTAGGTCTTCCTAAAGA
TTATCTATTTATCGTCTTGCTGCCTTTTTCCTTATGTTATGGCTTAATGACAGGATGGACAGCTTCAGTCCTACGTTCCT
TGGTTCAAAGTTTGCTGGCTGAGTTTGATATTAAAAAACTGGACAATATGGGAATAACCTTGCTTCTATTGTTTCTCTTG
TTACCTCATTTTCTCTTAACAGTGGGAGGTGTATTAAGTTGTTCCTATGCCTTCTTGTTGTGTTTGTTTGATTTTGAGGA
CTTGTCATCTTTAAAGAAATCAATCTATACGAGCTTGGTATTGAGTCTTGGGATTTTGCCCTTTTTAACCTACTATTATG
GGACTTTTCAACCAGTTAGTTTGATTCTCACTACAATCTTTTCAATTGTATTTGATAGCTTTCTCTTGCCTGTATTGACG
GTATTCTTTGCCCTCTCAGGACTGGTAATCTTTTCTCAAATCAACCCACTTTTTGAATGGATGGAGTCCTTTTTGACTTG
GATACAATCCTGGATAGGTCAACCTTTGATTTTAGGGAAACCTAGTTTGTTTCAGTTTGGCTTGATGATAGCTGTATTGA
TTTTGCTCTTTGATTTTTGGAAAAAGCCTCAGTTTAGGATTTGCCTTTTGATGATTTTTGGTCTTTTGATGGTCTGGGTC
AAACATCCTTTAACCAATGAGGTGACTGTGGTTGACGTTGGTCAGGGAGATAGTATTTTTCTGAGGAGTATGAAAGGCGA
GACTATCCTAATTGATGTGGGTGGCAAGGTGACGTTTGGAGCTAAGGAAAAATGGCAAGAGTCTAGCCAGACGAGCAATG
CGGAGAAAACCTTGATTCCCTATCTACAGGCTAGAGGAGTGTCTCAAATTGATTATCTAGTCCTGACGCATACGGACACA
GACCATATTGGTGATTTGGAAGAAGTGGCCAAGTGTTTTAAGATTAAGGAAATCTGTGTCAGTCAGGGGGCTTTGACTAA
GCCTAGCTTTGTTAAAAGACTTCGGACTATAAAATGCCCAGTTCACACTCTAAAGGCTGGCGACAAATTACCCATGATGG
GAAGCAATCTACAGGTTCTTTATCCAAATAAAGTTGGTGATGGCGGTAACAATGATTCGATAGTTCTTTACGGAAAGCTA
TTAGGAAGCAGTTTTCTGTTTACCGGTGATTTGGAAAAAGAAGGAGAGGAGGAACTGATGGTCAGCTATCCAACTTTAAG
GGCAAGCGTCCTCAAAGCTGGACACCACGGTTCAAAAGGTTCTTCGTCTGAAGCTTTTTTGGACCAGCTGCACCCCTCCC
TTGCACTTGTTTCAGCTGGTGAGAACAATCGTTATAAACATCCAAATGATGAAACAATAGAACGTTTTAAGCAACGCCAC
ATTAAAATTTTACGAACAGATAAAGACGGAGCCATCCGTTTTAAGGGCTGGTTTAAATGGTCAAGTGAAACTGTCCGATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

48.267

100

0.485

  comEC/celB Streptococcus mitis NCTC 12261

48.198

100

0.484

  comEC/celB Streptococcus pneumoniae Rx1

46.8

100

0.471

  comEC/celB Streptococcus pneumoniae D39

46.8

100

0.471

  comEC/celB Streptococcus pneumoniae R6

46.8

100

0.471

  comEC/celB Streptococcus pneumoniae TIGR4

46.462

100

0.466

  comEC Lactococcus lactis subsp. cremoris KW2

44.669

99.33

0.444


Multiple sequence alignment