Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACI6TB_RS00825 Genome accession   NZ_CP174270
Coordinates   175128..175742 (+) Length   204 a.a.
NCBI ID   WP_011608423.1    Uniprot ID   B0UVK3
Organism   Histophilus somni strain HSNMG-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 170128..180742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6TB_RS00810 (ACI6TB_00810) comP 170584..171264 (+) 681 WP_249960721.1 DUF2572 family protein Machinery gene
  ACI6TB_RS00815 (ACI6TB_00815) comQ 171245..171562 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  ACI6TB_RS00820 (ACI6TB_00820) recC 171615..175049 (+) 3435 WP_406812331.1 exodeoxyribonuclease V subunit gamma -
  ACI6TB_RS00825 (ACI6TB_00825) ruvA 175128..175742 (+) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene
  ACI6TB_RS00830 (ACI6TB_00830) ruvB 175753..176760 (+) 1008 WP_075293663.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACI6TB_RS00835 (ACI6TB_00835) - 176874..178082 (-) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  ACI6TB_RS00840 (ACI6TB_00840) cmoB 178082..179047 (-) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  ACI6TB_RS00845 (ACI6TB_00845) putP 179050..180564 (-) 1515 WP_011608427.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22637.63 Da        Isoelectric Point: 8.0493

>NTDB_id=964747 ACI6TB_RS00825 WP_011608423.1 175128..175742(+) (ruvA) [Histophilus somni strain HSNMG-1]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKLDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=964747 ACI6TB_RS00825 WP_011608423.1 175128..175742(+) (ruvA) [Histophilus somni strain HSNMG-1]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTGGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACTGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368