Detailed information NTG0964748

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ACI6TB_RS00830
• Genome accession: NZ_CP174270
• Coordinates: 175753..176760 (+)
• Length: 335 a.a.
• NCBI ID: WP_075293663.1
• Uniprot ID: A0A9Q6Z125
• Organism: Histophilus somni strain HSNMG-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 170753..181760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI6TB_RS00815 (ACI6TB_00815)	comQ	171245..171562 (+)	318	WP_012340547.1	DUF5374 domain-containing protein	Machinery gene
ACI6TB_RS00820 (ACI6TB_00820)	recC	171615..175049 (+)	3435	WP_406812331.1	exodeoxyribonuclease V subunit gamma	-
ACI6TB_RS00825 (ACI6TB_00825)	ruvA	175128..175742 (+)	615	WP_011608423.1	Holliday junction branch migration protein RuvA	Machinery gene
ACI6TB_RS00830 (ACI6TB_00830)	ruvB	175753..176760 (+)	1008	WP_075293663.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACI6TB_RS00835 (ACI6TB_00835)	-	176874..178082 (-)	1209	WP_012340582.1	NAD(P)/FAD-dependent oxidoreductase	-
ACI6TB_RS00840 (ACI6TB_00840)	cmoB	178082..179047 (-)	966	WP_012340593.1	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	-
ACI6TB_RS00845 (ACI6TB_00845)	putP	179050..180564 (-)	1515	WP_011608427.1	sodium/proline symporter PutP	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37235.80 Da
• Isoelectric Point: 4.7323

>NTDB_id=964748 ACI6TB_RS00830 WP_075293663.1 175753..176760(+) (ruvB) [Histophilus somni strain HSNMG-1]
MIEVDRIVSANAKVDDEYIDRAIRPKLLSDYIGQPQVREQMEIFIQAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLASIVTRSAVCLQLEIDVDAGQEIACRSRGTPRIANRLLRRVRDYADVKNGG
KITALIAQEALKMLDVDLAGFDFMDRKLLQAIIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSRTYRHFGLEQIEK

Nucleotide

• Length: 1008 bp

>NTDB_id=964748 ACI6TB_RS00830 WP_075293663.1 175753..176760(+) (ruvB) [Histophilus somni strain HSNMG-1]
ATGATTGAAGTAGATCGCATTGTAAGTGCCAATGCAAAAGTAGACGATGAATATATTGATCGTGCAATTCGCCCTAAATT
ATTGAGTGATTATATCGGTCAACCTCAAGTTAGAGAGCAAATGGAAATTTTCATCCAAGCAGCAAAATTACGCCAAGATG
CACTTGATCATTTGTTAATTTTTGGACCCCCGGGACTAGGAAAAACAACGTTGGCGAATATTGTTGCCAATGAAATGGGA
GTGAATATTCGTACTACTTCAGGTCCGGTTTTAGAAAAAGCGGGGGATTTGGCGGCAATGCTAACGAATCTTGAGCCTCA
TGATGTATTATTCATTGATGAAATTCATCGCTTATCACCAGCTATTGAGGAAGTTCTTTATCCGGCGATGGAAGATTATC
AACTGGATATTATGATTGGAGAAGGTCCTGCTGCCCGTTCAATAAAGCTGGATTTACCGCCTTTTACGCTGATTGGAGCA
ACAACAAGAGCAGGCTCTTTGACTTCTCCATTACGAGATCGATTCGGTATTGTGCAGCGACTGGAGTTTTATTCTGTAGA
GGATTTAGCTTCCATTGTTACTCGAAGTGCGGTCTGTTTGCAGCTTGAAATTGATGTTGACGCAGGACAAGAAATTGCTT
GTCGTTCACGAGGTACCCCACGTATTGCAAATCGCCTATTACGCCGAGTGCGAGATTATGCCGATGTCAAAAATGGTGGG
AAAATTACCGCACTTATTGCTCAAGAAGCACTGAAGATGCTGGATGTGGATCTTGCAGGATTTGATTTTATGGATCGTAA
ATTATTACAGGCAATTATTGAGCGGTTTGATGGCGGACCTGTAGGATTGGATAATTTGGCGGCGGCAATTGGCGAAGAGC
GAGATACTATTGAAGATGTATTGGAGCCTTATTTAATTCAGCAAGGATTTTTACAACGGACACCTCGTGGAAGAATAGCA
ACATCAAGAACTTATCGACATTTTGGTTTGGAACAGATTGAAAAATAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

3D structure

• AlphaFold DB: A0A9Q6Z125

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	63.609	97.612	0.621
ruvB	Streptococcus pneumoniae TIGR4	57.831	99.104	0.573
ruvB	Streptococcus pneumoniae R6	57.831	99.104	0.573
ruvB	Streptococcus pneumoniae D39	57.831	99.104	0.573
ruvB	Synechocystis sp. PCC 6803	55.732	93.731	0.522
ruvB	Helicobacter pylori 26695	56.908	90.746	0.516