Detailed information
Bioinformatically predicted
Overview
| Name | comQ | Type | Machinery gene |
| Locus tag | ACI6TB_RS00815 | Genome accession | NZ_CP174270 |
| Coordinates | 171245..171562 (+) | Length | 105 a.a. |
| NCBI ID | WP_012340547.1 | Uniprot ID | A0A9Q6K6P7 |
| Organism | Histophilus somni strain HSNMG-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 166245..176562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6TB_RS00775 (ACI6TB_00775) | tolB | 166885..168189 (+) | 1305 | WP_406812330.1 | Tol-Pal system beta propeller repeat protein TolB | - |
| ACI6TB_RS00780 (ACI6TB_00780) | pal | 168199..168654 (+) | 456 | WP_075293668.1 | peptidoglycan-associated lipoprotein Pal | - |
| ACI6TB_RS00800 (ACI6TB_00800) | comN | 169328..169855 (+) | 528 | WP_011608418.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACI6TB_RS00805 (ACI6TB_00805) | comO | 169904..170581 (+) | 678 | WP_011608419.1 | type II secretion system protein J | Machinery gene |
| ACI6TB_RS00810 (ACI6TB_00810) | comP | 170584..171264 (+) | 681 | WP_249960721.1 | DUF2572 family protein | Machinery gene |
| ACI6TB_RS00815 (ACI6TB_00815) | comQ | 171245..171562 (+) | 318 | WP_012340547.1 | DUF5374 domain-containing protein | Machinery gene |
| ACI6TB_RS00820 (ACI6TB_00820) | recC | 171615..175049 (+) | 3435 | WP_406812331.1 | exodeoxyribonuclease V subunit gamma | - |
| ACI6TB_RS00825 (ACI6TB_00825) | ruvA | 175128..175742 (+) | 615 | WP_011608423.1 | Holliday junction branch migration protein RuvA | Machinery gene |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 12552.55 Da Isoelectric Point: 9.7112
>NTDB_id=964746 ACI6TB_RS00815 WP_012340547.1 171245..171562(+) (comQ) [Histophilus somni strain HSNMG-1]
MIFNHYKFPQRGTSLITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGY
KFKINCEGKNVRVSYANQQVNLLLD
MIFNHYKFPQRGTSLITLLVTMMIFSTLFLFVNQWVSYQRKSAVNIYLRYQALQIAENQHQRLFLEPHFHCPHNIEQNGY
KFKINCEGKNVRVSYANQQVNLLLD
Nucleotide
Download Length: 318 bp
>NTDB_id=964746 ACI6TB_RS00815 WP_012340547.1 171245..171562(+) (comQ) [Histophilus somni strain HSNMG-1]
ATGATTTTCAACCATTATAAATTTCCTCAACGGGGTACCAGCTTGATCACGTTATTAGTCACAATGATGATATTTTCTAC
ATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGC
AAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTAT
AAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAATTTATTGCTTGATTAA
ATGATTTTCAACCATTATAAATTTCCTCAACGGGGTACCAGCTTGATCACGTTATTAGTCACAATGATGATATTTTCTAC
ATTATTTTTATTTGTTAATCAATGGGTTAGTTATCAAAGAAAAAGTGCGGTAAATATTTATCTACGTTATCAAGCTTTGC
AAATCGCTGAAAATCAACATCAACGCTTATTTCTAGAACCGCATTTTCATTGTCCGCATAATATCGAGCAAAATGGTTAT
AAGTTTAAGATCAATTGTGAAGGTAAGAATGTACGAGTTTCTTATGCAAATCAACAAGTAAATTTATTGCTTGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comQ | Haemophilus influenzae Rd KW20 |
46.667 |
85.714 |
0.4 |