Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACI6TB_RS00810 Genome accession   NZ_CP174270
Coordinates   170584..171264 (+) Length   226 a.a.
NCBI ID   WP_249960721.1    Uniprot ID   -
Organism   Histophilus somni strain HSNMG-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 165584..176264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI6TB_RS00770 (ACI6TB_00770) tolA 165802..166857 (+) 1056 WP_406812329.1 cell envelope integrity protein TolA -
  ACI6TB_RS00775 (ACI6TB_00775) tolB 166885..168189 (+) 1305 WP_406812330.1 Tol-Pal system beta propeller repeat protein TolB -
  ACI6TB_RS00780 (ACI6TB_00780) pal 168199..168654 (+) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  ACI6TB_RS00800 (ACI6TB_00800) comN 169328..169855 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACI6TB_RS00805 (ACI6TB_00805) comO 169904..170581 (+) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  ACI6TB_RS00810 (ACI6TB_00810) comP 170584..171264 (+) 681 WP_249960721.1 DUF2572 family protein Machinery gene
  ACI6TB_RS00815 (ACI6TB_00815) comQ 171245..171562 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  ACI6TB_RS00820 (ACI6TB_00820) recC 171615..175049 (+) 3435 WP_406812331.1 exodeoxyribonuclease V subunit gamma -
  ACI6TB_RS00825 (ACI6TB_00825) ruvA 175128..175742 (+) 615 WP_011608423.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26126.48 Da        Isoelectric Point: 9.7821

>NTDB_id=964745 ACI6TB_RS00810 WP_249960721.1 170584..171264(+) (comP) [Histophilus somni strain HSNMG-1]
MNIQKGVVTLTLLMLLSSVLLILLFFDGDLISLHSSIVSQRKIYLEQSLILQRQSISQKEKLCENQPLNNNLKSLKIEFE
SRRKIDRTSQFVWCERKYLFKKRPKKATYEAGLSQYINLELLDLFQHKLHSPPAILPRDKVNYLYWVEEKSAELEIQGNI
NAVVIAEGDLKLTGKGKISGTVITGGKLSIEPAVKIVYRSKTIIDLIRSYSYWQFAENSWYDFQPL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=964745 ACI6TB_RS00810 WP_249960721.1 170584..171264(+) (comP) [Histophilus somni strain HSNMG-1]
ATGAATATACAAAAAGGAGTTGTAACGCTCACCCTATTAATGCTGTTAAGCTCAGTATTATTAATTTTACTTTTTTTTGA
TGGTGATTTGATTTCGTTGCATTCATCCATTGTTTCTCAACGGAAAATATATTTAGAACAAAGTCTTATATTACAGAGAC
AAAGTATTTCTCAAAAAGAAAAACTTTGTGAAAACCAGCCTCTGAATAATAATTTGAAAAGTTTGAAGATCGAATTTGAA
AGTCGACGAAAAATTGACCGCACTTCTCAATTTGTATGGTGTGAAAGAAAATATTTGTTTAAAAAAAGGCCGAAAAAAGC
TACTTATGAGGCAGGGCTAAGTCAGTATATAAATCTTGAGTTACTGGACTTATTTCAACATAAATTACATTCACCGCCTG
CTATTTTGCCGAGAGATAAAGTAAATTACCTCTATTGGGTTGAGGAAAAATCAGCTGAATTGGAGATACAAGGTAATATT
AATGCAGTTGTTATTGCTGAAGGGGATTTGAAGTTAACAGGAAAAGGTAAAATTAGTGGAACGGTTATTACCGGCGGGAA
ATTAAGTATTGAACCAGCAGTTAAAATTGTGTATCGCTCAAAAACAATCATCGATCTTATCCGATCATATAGTTATTGGC
AGTTTGCGGAGAATAGTTGGTATGATTTTCAACCATTATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

43.946

98.673

0.434