Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | NST31_RS11280 | Genome accession | NZ_CP150169 |
| Coordinates | 2393160..2393669 (+) | Length | 169 a.a. |
| NCBI ID | WP_077112040.1 | Uniprot ID | - |
| Organism | Siminovitchia sp. FSL W7-1587 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2388160..2398669
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NST31_RS11260 (NST31_11260) | - | 2389512..2390654 (+) | 1143 | WP_205180045.1 | thiolase family protein | - |
| NST31_RS11265 (NST31_11265) | menE | 2390679..2392232 (+) | 1554 | WP_205180047.1 | o-succinylbenzoate--CoA ligase | - |
| NST31_RS11270 (NST31_11270) | - | 2392330..2392674 (+) | 345 | WP_077112042.1 | DUF378 domain-containing protein | - |
| NST31_RS11275 (NST31_11275) | rpsF | 2392818..2393108 (+) | 291 | WP_077112041.1 | 30S ribosomal protein S6 | - |
| NST31_RS11280 (NST31_11280) | ssbA | 2393160..2393669 (+) | 510 | WP_077112040.1 | single-stranded DNA-binding protein | Machinery gene |
| NST31_RS11285 (NST31_11285) | rpsR | 2393694..2393930 (+) | 237 | WP_077112039.1 | 30S ribosomal protein S18 | - |
| NST31_RS11290 (NST31_11290) | - | 2394627..2395562 (+) | 936 | WP_205180049.1 | YybS family protein | - |
| NST31_RS11295 (NST31_11295) | - | 2395588..2397561 (+) | 1974 | WP_077112037.1 | DHH family phosphoesterase | - |
| NST31_RS11300 (NST31_11300) | rplI | 2397558..2398007 (+) | 450 | WP_339160628.1 | 50S ribosomal protein L9 | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 18726.44 Da Isoelectric Point: 4.5519
>NTDB_id=964667 NST31_RS11280 WP_077112040.1 2393160..2393669(+) (ssbA) [Siminovitchia sp. FSL W7-1587]
MMNRVVLVGRLTRDPELRYTPSGVPVANFTLAVNRTFTNQQGEREADFINCVIWRRPAENVANYLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVVADSVQFLEPRSATQQDRGGDFGGSQFGGGTQKSQGYSYGQQEQQGSQGYTRTDEDPFSNDGQPI
DISDDDLPF
MMNRVVLVGRLTRDPELRYTPSGVPVANFTLAVNRTFTNQQGEREADFINCVIWRRPAENVANYLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVVADSVQFLEPRSATQQDRGGDFGGSQFGGGTQKSQGYSYGQQEQQGSQGYTRTDEDPFSNDGQPI
DISDDDLPF
Nucleotide
Download Length: 510 bp
>NTDB_id=964667 NST31_RS11280 WP_077112040.1 2393160..2393669(+) (ssbA) [Siminovitchia sp. FSL W7-1587]
ATGATGAACCGAGTTGTATTGGTAGGCAGATTAACGAGGGATCCGGAATTGCGGTATACCCCAAGCGGGGTGCCGGTCGC
CAATTTTACATTGGCTGTAAACCGAACATTTACGAATCAGCAAGGGGAACGCGAAGCGGACTTTATTAATTGTGTCATAT
GGCGTCGTCCAGCAGAAAATGTCGCCAACTACTTAAAAAAAGGAAGTTTGGCTGGTGTTGATGGCCGGATTCAGTCGCGC
AGTTATGAAGGGCAGGACGGAAAACGCGTGTATGTGACCGAAGTTGTTGCGGACAGTGTCCAGTTTCTGGAACCTAGAAG
TGCAACCCAACAAGACCGAGGTGGAGATTTTGGAGGAAGCCAATTTGGTGGTGGAACCCAAAAAAGCCAAGGTTATTCTT
ATGGGCAACAGGAACAACAGGGAAGCCAAGGATATACTCGGACAGATGAAGACCCGTTCTCTAACGATGGACAACCGATC
GACATTTCTGATGACGATCTACCATTCTAA
ATGATGAACCGAGTTGTATTGGTAGGCAGATTAACGAGGGATCCGGAATTGCGGTATACCCCAAGCGGGGTGCCGGTCGC
CAATTTTACATTGGCTGTAAACCGAACATTTACGAATCAGCAAGGGGAACGCGAAGCGGACTTTATTAATTGTGTCATAT
GGCGTCGTCCAGCAGAAAATGTCGCCAACTACTTAAAAAAAGGAAGTTTGGCTGGTGTTGATGGCCGGATTCAGTCGCGC
AGTTATGAAGGGCAGGACGGAAAACGCGTGTATGTGACCGAAGTTGTTGCGGACAGTGTCCAGTTTCTGGAACCTAGAAG
TGCAACCCAACAAGACCGAGGTGGAGATTTTGGAGGAAGCCAATTTGGTGGTGGAACCCAAAAAAGCCAAGGTTATTCTT
ATGGGCAACAGGAACAACAGGGAAGCCAAGGATATACTCGGACAGATGAAGACCCGTTCTCTAACGATGGACAACCGATC
GACATTTCTGATGACGATCTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
67.052 |
100 |
0.686 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.538 |
100 |
0.609 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
62.264 |
62.722 |
0.391 |
| ssb | Neisseria meningitidis MC58 |
35.196 |
100 |
0.373 |
| ssb | Neisseria gonorrhoeae MS11 |
35 |
100 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
34.615 |
100 |
0.373 |