Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   NYE79_RS09835 Genome accession   NZ_CP150168
Coordinates   2015238..2015900 (-) Length   220 a.a.
NCBI ID   WP_070696103.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010238..2020900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS09815 (NYE79_09815) rplI 2010771..2011223 (-) 453 WP_000864211.1 50S ribosomal protein L9 -
  NYE79_RS09820 (NYE79_09820) - 2011220..2013193 (-) 1974 WP_000739978.1 DHH family phosphoesterase -
  NYE79_RS09825 (NYE79_09825) - 2013350..2014528 (-) 1179 WP_216728667.1 acetyl-CoA C-acetyltransferase -
  NYE79_RS09830 (NYE79_09830) raiA 2014610..2015158 (-) 549 WP_000599111.1 ribosome-associated translation inhibitor RaiA -
  NYE79_RS09835 (NYE79_09835) comFC/cflB 2015238..2015900 (-) 663 WP_070696103.1 ComF family protein Machinery gene
  NYE79_RS09840 (NYE79_09840) comFA/cflA 2015897..2017195 (-) 1299 WP_216728668.1 helicase-related protein Machinery gene
  NYE79_RS09845 (NYE79_09845) - 2017252..2017887 (+) 636 WP_049479395.1 YigZ family protein -
  NYE79_RS09850 (NYE79_09850) - 2017903..2018346 (+) 444 WP_000863904.1 PH domain-containing protein -
  NYE79_RS09855 (NYE79_09855) cysK 2018443..2019369 (+) 927 WP_216728669.1 cysteine synthase A -
  NYE79_RS09860 (NYE79_09860) tsf 2019458..2020498 (-) 1041 WP_251464135.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24873.98 Da        Isoelectric Point: 8.6244

>NTDB_id=964642 NYE79_RS09835 WP_070696103.1 2015238..2015900(-) (comFC/cflB) [Streptococcus sp. FSL W8-0197]
MNCLLCGQTTKSELTFGSLFLLKHDCSYLCSACASSFEKIGEKYCPNCMKTGLSTKCQDCKLWCKEGIQVDHKAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASVLAEELKKYRGYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFKDILGKREESASSS
KSRLERLTTEIPFFIKDGISLPKKILLIDDIYTTGATVNRVKRLLAEAGALEVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=964642 NYE79_RS09835 WP_070696103.1 2015238..2015900(-) (comFC/cflB) [Streptococcus sp. FSL W8-0197]
ATGAACTGTTTATTATGTGGTCAGACTACAAAAAGTGAGTTAACTTTTGGTAGTCTCTTCCTTTTGAAGCACGACTGCAG
TTATCTATGCTCAGCTTGTGCTTCTAGTTTTGAGAAGATTGGTGAGAAATATTGTCCAAACTGTATGAAAACAGGACTGT
CAACTAAGTGTCAAGATTGTAAACTTTGGTGTAAAGAAGGAATTCAAGTTGATCATAAAGCAATCTTTACCTATAATCAA
GCTATGAAAGACTTTTTCAGTAGATATAAGTTTGATGGTGATTTTTTGCTTAGAAAAGTTTTTGCTTCCGTTCTTGCTGA
GGAACTGAAAAAGTATAGAGGTTATCAATTTGTTGTAATTCCCCTAAGCCCTGAAAGATTGCTTGAGAGGGGGTTTAACC
AAGTCGAGGGTTTGGTTGAGGCAGCAGGCTTTTCTTTTAAAGATATATTAGGAAAAAGAGAAGAGAGCGCTAGTTCTTCT
AAAAGCCGTTTAGAAAGGTTGACTACTGAAATTCCATTTTTTATTAAAGATGGAATCTCACTTCCCAAGAAGATTTTGCT
GATTGATGATATCTATACAACAGGGGCAACTGTGAATCGTGTGAAACGACTTTTGGCAGAAGCAGGTGCTTTGGAAGTTA
AAACTTTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(177-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

79.091

100

0.791
  comFC/cflB Streptococcus mitis SK321

78.182

100

0.782
  comFC/cflB Streptococcus pneumoniae TIGR4

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae Rx1

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae D39

77.727

100

0.777
  comFC/cflB Streptococcus pneumoniae R6

77.727

100

0.777
  comFC Bacillus subtilis subsp. subtilis str. 168

36.564

100

0.377

Multiple sequence alignment