Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   NYE79_RS09840 Genome accession   NZ_CP150168
Coordinates   2015897..2017195 (-) Length   432 a.a.
NCBI ID   WP_216728668.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2010897..2022195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS09820 (NYE79_09820) - 2011220..2013193 (-) 1974 WP_000739978.1 DHH family phosphoesterase -
  NYE79_RS09825 (NYE79_09825) - 2013350..2014528 (-) 1179 WP_216728667.1 acetyl-CoA C-acetyltransferase -
  NYE79_RS09830 (NYE79_09830) raiA 2014610..2015158 (-) 549 WP_000599111.1 ribosome-associated translation inhibitor RaiA -
  NYE79_RS09835 (NYE79_09835) comFC/cflB 2015238..2015900 (-) 663 WP_070696103.1 ComF family protein Machinery gene
  NYE79_RS09840 (NYE79_09840) comFA/cflA 2015897..2017195 (-) 1299 WP_216728668.1 helicase-related protein Machinery gene
  NYE79_RS09845 (NYE79_09845) - 2017252..2017887 (+) 636 WP_049479395.1 YigZ family protein -
  NYE79_RS09850 (NYE79_09850) - 2017903..2018346 (+) 444 WP_000863904.1 PH domain-containing protein -
  NYE79_RS09855 (NYE79_09855) cysK 2018443..2019369 (+) 927 WP_216728669.1 cysteine synthase A -
  NYE79_RS09860 (NYE79_09860) tsf 2019458..2020498 (-) 1041 WP_251464135.1 translation elongation factor Ts -
  NYE79_RS09865 (NYE79_09865) rpsB 2020577..2021356 (-) 780 WP_000268475.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 49627.43 Da        Isoelectric Point: 7.8275

>NTDB_id=964643 NYE79_RS09840 WP_216728668.1 2015897..2017195(-) (comFA/cflA) [Streptococcus sp. FSL W8-0197]
MKVNPNYLGRLFTEKELTEEERQMAEKLPAMRKEKGKLFCQRCNSSILEEWHLPIGAYYCRECLLMERVRSDQALYYFPQ
EDFPKQDVLKWRGQLTPFQEKVSEGLLQAVDKQEPTLVHAVTGAGKTEMIYQVVAKVIDEGGAVCLASPRIDVCLELYKR
LQNDFACDIALLHGESEPYFRTPLAVATTHQLLKFYHAFDLLIVDEVDAFPYVDNTMLYYAVKNSVKEDGLRIFLTATST
DELDRKVRTKELKRLSLPRRFHGNPLIIPKSVWLSDFNRCLEKNQLSTKLKTYIEKQRRTGYPLLIFASEIKKGEKLKEI
LQVDFPNENIGFVSSITENRLEQVQAFRDGELTILISTTILERGVTFPCVDVFVVEANHRLFTKSSLIQIGGRVGRSMDR
PTGELLFFHDGLNASIKKAIKEIKQMNKEAGL

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=964643 NYE79_RS09840 WP_216728668.1 2015897..2017195(-) (comFA/cflA) [Streptococcus sp. FSL W8-0197]
ATGAAAGTAAATCCAAATTACCTCGGTCGCTTGTTTACTGAGAAAGAATTAACAGAAGAAGAACGGCAGATGGCTGAGAA
ACTTCCAGCAATGAGAAAAGAGAAAGGGAAACTGTTTTGTCAACGTTGTAATAGTAGTATTCTAGAAGAATGGCATTTGC
CTATAGGCGCTTACTATTGTAGGGAGTGTTTATTGATGGAGAGAGTCAGGAGTGATCAAGCTTTATACTATTTTCCACAG
GAGGATTTTCCTAAGCAAGACGTCCTCAAATGGCGTGGTCAGTTAACACCTTTTCAAGAAAAAGTTTCAGAGGGACTTCT
TCAAGCGGTAGACAAGCAAGAGCCAACCTTGGTTCACGCTGTAACAGGAGCTGGAAAGACAGAGATGATTTATCAAGTTG
TGGCTAAAGTGATTGATGAAGGTGGTGCAGTTTGTTTAGCCAGCCCTCGAATTGATGTGTGTTTGGAACTGTATAAGCGA
CTGCAGAATGACTTTGCTTGCGATATAGCGCTACTCCATGGCGAATCAGAGCCCTATTTTCGAACTCCCCTAGCAGTTGC
AACAACTCATCAGTTATTAAAATTTTATCATGCTTTTGATTTGTTGATAGTGGATGAGGTAGATGCCTTTCCTTATGTTG
ACAACACTATGCTTTACTATGCTGTAAAGAATAGTGTAAAGGAGGATGGATTGAGGATATTCCTTACAGCAACTTCTACA
GATGAGTTAGATAGGAAGGTTCGCACAAAGGAATTAAAAAGATTAAGCTTGCCGAGACGGTTTCATGGAAATCCTTTGAT
TATTCCTAAATCTGTCTGGCTATCGGATTTTAATCGCTGTTTAGAGAAAAATCAATTGTCAACCAAGTTAAAAACCTACA
TTGAGAAACAGAGAAGAACAGGTTATCCACTGCTGATTTTTGCATCAGAGATTAAGAAAGGCGAAAAACTAAAAGAAATA
CTACAGGTGGATTTCCCGAATGAGAATATCGGTTTTGTATCTTCTATCACAGAAAATCGATTAGAGCAAGTACAAGCTTT
TCGAGATGGAGAGTTGACGATACTAATCAGTACGACAATATTGGAACGCGGAGTTACCTTCCCTTGTGTAGATGTTTTCG
TAGTAGAAGCTAATCATCGTCTCTTTACCAAGTCTAGCTTGATTCAGATTGGTGGTCGAGTTGGGCGTAGTATGGACAGA
CCGACTGGTGAGTTGCTCTTCTTTCATGATGGATTAAATGCTTCCATCAAGAAGGCAATCAAGGAAATCAAGCAGATGAA
CAAGGAGGCGGGATTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(94-165)

Helicase conserved C-terminal domain (Helicase_C)

(292-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus mitis NCTC 12261

91.435

100

0.914
  comFA/cflA Streptococcus pneumoniae Rx1

90.046

100

0.9
  comFA/cflA Streptococcus pneumoniae D39

90.046

100

0.9
  comFA/cflA Streptococcus pneumoniae R6

90.046

100

0.9
  comFA/cflA Streptococcus mitis SK321

89.815

100

0.898
  comFA/cflA Streptococcus pneumoniae TIGR4

89.815

100

0.898
  comFA Lactococcus lactis subsp. cremoris KW2

51.471

94.444

0.486
  comFA Latilactobacillus sakei subsp. sakei 23K

38.532

100

0.389

Multiple sequence alignment