Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   AABA19_RS06330 Genome accession   NZ_AP028609
Coordinates   1258111..1258458 (-) Length   115 a.a.
NCBI ID   WP_078133805.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253111..1263458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS06300 (TKY121806_12410) - 1253453..1254388 (+) 936 WP_000401770.1 DHH family phosphoesterase -
  AABA19_RS06305 (TKY121806_12420) - 1254484..1254726 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  AABA19_RS06310 (TKY121806_12430) - 1254783..1255001 (-) 219 WP_000028150.1 hypothetical protein -
  AABA19_RS06315 - 1254998..1255749 (-) 752 Protein_1249 transposase -
  AABA19_RS06320 (TKY121806_12450) gdhA 1256086..1257432 (+) 1347 WP_000199564.1 NADP-specific glutamate dehydrogenase -
  AABA19_RS06325 (TKY121806_12460) - 1257928..1258098 (-) 171 WP_000711942.1 hypothetical protein -
  AABA19_RS06330 (TKY121806_12470) comA/nlmT 1258111..1258458 (-) 348 WP_078133805.1 ATP-binding cassette domain-containing protein Regulator
  AABA19_RS06335 comA 1258515..1258679 (-) 165 WP_109701449.1 hypothetical protein Regulator
  AABA19_RS06340 (TKY121806_12480) - 1258705..1259194 (-) 490 Protein_1254 transposase -
  AABA19_RS06345 (TKY121806_12490) - 1259203..1259917 (+) 715 Protein_1255 IS630 family transposase -
  AABA19_RS06350 (TKY121806_12500) - 1260151..1260603 (-) 453 Protein_1256 hypothetical protein -
  AABA19_RS06355 (TKY121806_12520) - 1260605..1260892 (-) 288 WP_000869754.1 hypothetical protein -
  AABA19_RS06360 - 1261477..1262828 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  AABA19_RS06365 - 1262928..1263326 (-) 399 Protein_1259 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12762.88 Da        Isoelectric Point: 9.7118

>NTDB_id=95967 AABA19_RS06330 WP_078133805.1 1258111..1258458(-) (comA/nlmT) [Streptococcus pneumoniae strain Sep4]
MAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDA
DIIVVMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=95967 AABA19_RS06330 WP_078133805.1 1258111..1258458(-) (comA/nlmT) [Streptococcus pneumoniae strain Sep4]
ATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGC
ACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGG
AAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCG
GATATTATTGTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTA
CTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

95.652

0.47
  comA Streptococcus gordonii str. Challis substr. CH1

49.074

93.913

0.461
  comA Streptococcus mitis NCTC 12261

49.074

93.913

0.461
  comA Streptococcus mitis SK321

49.074

93.913

0.461
  comA Streptococcus pneumoniae R6

48.148

93.913

0.452
  comA Streptococcus pneumoniae Rx1

48.148

93.913

0.452
  comA Streptococcus pneumoniae D39

48.148

93.913

0.452
  comA Streptococcus pneumoniae TIGR4

48.148

93.913

0.452
  rcrQ Streptococcus mutans UA159

42.105

99.13

0.417
  rcrP Streptococcus mutans UA159

44.33

84.348

0.374

Multiple sequence alignment