Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   AABA14_RS06205 Genome accession   NZ_AP028607
Coordinates   1228728..1229075 (-) Length   115 a.a.
NCBI ID   WP_078133805.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1223728..1234075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS06175 (TKY123642_12200) - 1223842..1224084 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  AABA14_RS06180 (TKY123642_12210) - 1224141..1224719 (-) 579 WP_050208605.1 iron permease -
  AABA14_RS06185 (TKY123642_12220) efeB 1224694..1225707 (-) 1014 Protein_1221 iron uptake transporter deferrochelatase/peroxidase subunit -
  AABA14_RS06190 - 1225710..1226291 (-) 582 Protein_1222 winged helix-turn-helix domain-containing protein -
  AABA14_RS06195 (TKY123642_12240) gdhA 1226703..1228049 (+) 1347 WP_000199534.1 NADP-specific glutamate dehydrogenase -
  AABA14_RS06200 (TKY123642_12250) - 1228545..1228715 (-) 171 WP_000711942.1 hypothetical protein -
  AABA14_RS06205 (TKY123642_12260) comA/nlmT 1228728..1229075 (-) 348 WP_078133805.1 ATP-binding cassette domain-containing protein Regulator
  AABA14_RS06210 comA 1229132..1229296 (-) 165 WP_109701449.1 hypothetical protein Regulator
  AABA14_RS06215 - 1229322..1229831 (-) 510 Protein_1227 transposase -
  AABA14_RS06220 (TKY123642_12280) - 1229840..1230554 (+) 715 Protein_1228 IS630 family transposase -
  AABA14_RS06225 (TKY123642_12290) - 1230788..1231240 (-) 453 Protein_1229 hypothetical protein -
  AABA14_RS06230 (TKY123642_12310) - 1231242..1231529 (-) 288 WP_000869754.1 hypothetical protein -
  AABA14_RS06235 - 1232123..1232521 (-) 399 Protein_1231 ATP-binding cassette domain-containing protein -
  AABA14_RS06240 (TKY123642_12330) - 1232609..1233220 (-) 612 WP_000251931.1 V-type ATP synthase subunit D -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12762.88 Da        Isoelectric Point: 9.7118

>NTDB_id=95731 AABA14_RS06205 WP_078133805.1 1228728..1229075(-) (comA/nlmT) [Streptococcus pneumoniae strain Sep2]
MAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDA
DIIVVMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=95731 AABA14_RS06205 WP_078133805.1 1228728..1229075(-) (comA/nlmT) [Streptococcus pneumoniae strain Sep2]
ATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGC
ACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGG
AAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCG
GATATTATTGTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTA
CTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

95.652

0.47
  comA Streptococcus gordonii str. Challis substr. CH1

49.074

93.913

0.461
  comA Streptococcus mitis NCTC 12261

49.074

93.913

0.461
  comA Streptococcus mitis SK321

49.074

93.913

0.461
  comA Streptococcus pneumoniae R6

48.148

93.913

0.452
  comA Streptococcus pneumoniae Rx1

48.148

93.913

0.452
  comA Streptococcus pneumoniae D39

48.148

93.913

0.452
  comA Streptococcus pneumoniae TIGR4

48.148

93.913

0.452
  rcrQ Streptococcus mutans UA159

42.105

99.13

0.417
  rcrP Streptococcus mutans UA159

44.33

84.348

0.374

Multiple sequence alignment