Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   ACIVIR_RS08070 Genome accession   NZ_CP173225
Coordinates   1569501..1569848 (-) Length   115 a.a.
NCBI ID   WP_078133805.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 262     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564501..1574848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS08040 - 1564843..1565778 (+) 936 WP_000401770.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  ACIVIR_RS08045 - 1565874..1566116 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  ACIVIR_RS08050 - 1566173..1566391 (-) 219 WP_000028150.1 hypothetical protein -
  ACIVIR_RS08055 - 1566388..1567139 (-) 752 Protein_1547 transposase -
  ACIVIR_RS08060 gdhA 1567476..1568822 (+) 1347 WP_000199564.1 NADP-specific glutamate dehydrogenase -
  ACIVIR_RS08065 - 1569318..1569488 (-) 171 WP_000711942.1 hypothetical protein -
  ACIVIR_RS08070 comA/nlmT 1569501..1569848 (-) 348 WP_078133805.1 ATP-binding cassette domain-containing protein Regulator
  ACIVIR_RS08075 comA 1569905..1570069 (-) 165 WP_109701449.1 hypothetical protein Regulator
  ACIVIR_RS08080 - 1570095..1570604 (-) 510 Protein_1552 transposase -
  ACIVIR_RS08085 - 1570613..1571327 (+) 715 Protein_1553 IS630 family transposase -
  ACIVIR_RS08090 - 1571561..1572013 (-) 453 Protein_1554 hypothetical protein -
  ACIVIR_RS08095 - 1572015..1572302 (-) 288 WP_000869754.1 hypothetical protein -
  ACIVIR_RS08100 - 1572887..1574238 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  ACIVIR_RS08105 - 1574338..1574736 (-) 399 Protein_1557 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12762.88 Da        Isoelectric Point: 9.7118

>NTDB_id=957271 ACIVIR_RS08070 WP_078133805.1 1569501..1569848(-) (comA/nlmT) [Streptococcus pneumoniae strain 262]
MAMPMKFNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDA
DIIVVMKGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 348 bp        

>NTDB_id=957271 ACIVIR_RS08070 WP_078133805.1 1569501..1569848(-) (comA/nlmT) [Streptococcus pneumoniae strain 262]
ATGGCTATGCCGATGAAATTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGC
ACTGGCACGTGCATTAATAAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGG
AAAGAATAACAAAGTATATACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCG
GATATTATTGTTGTAATGAAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTA
CTACAGCTTATATACAAAAAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(8-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

49.091

95.652

0.47
  comA Streptococcus gordonii str. Challis substr. CH1

49.074

93.913

0.461
  comA Streptococcus mitis NCTC 12261

49.074

93.913

0.461
  comA Streptococcus mitis SK321

49.074

93.913

0.461
  comA Streptococcus pneumoniae R6

48.148

93.913

0.452
  comA Streptococcus pneumoniae Rx1

48.148

93.913

0.452
  comA Streptococcus pneumoniae D39

48.148

93.913

0.452
  comA Streptococcus pneumoniae TIGR4

48.148

93.913

0.452
  rcrQ Streptococcus mutans UA159

42.105

99.13

0.417
  rcrP Streptococcus mutans UA159

44.33

84.348

0.374