Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACIVIR_RS08075 Genome accession   NZ_CP173225
Coordinates   1569905..1570069 (-) Length   54 a.a.
NCBI ID   WP_109701449.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 262     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564905..1575069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS08045 - 1565874..1566116 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  ACIVIR_RS08050 - 1566173..1566391 (-) 219 WP_000028150.1 hypothetical protein -
  ACIVIR_RS08055 - 1566388..1567139 (-) 752 Protein_1547 transposase -
  ACIVIR_RS08060 gdhA 1567476..1568822 (+) 1347 WP_000199564.1 NADP-specific glutamate dehydrogenase -
  ACIVIR_RS08065 - 1569318..1569488 (-) 171 WP_000711942.1 hypothetical protein -
  ACIVIR_RS08070 comA/nlmT 1569501..1569848 (-) 348 WP_078133805.1 ATP-binding cassette domain-containing protein Regulator
  ACIVIR_RS08075 comA 1569905..1570069 (-) 165 WP_109701449.1 hypothetical protein Regulator
  ACIVIR_RS08080 - 1570095..1570604 (-) 510 Protein_1552 transposase -
  ACIVIR_RS08085 - 1570613..1571327 (+) 715 Protein_1553 IS630 family transposase -
  ACIVIR_RS08090 - 1571561..1572013 (-) 453 Protein_1554 hypothetical protein -
  ACIVIR_RS08095 - 1572015..1572302 (-) 288 WP_000869754.1 hypothetical protein -
  ACIVIR_RS08100 - 1572887..1574238 (+) 1352 WP_088804224.1 IS3-like element ISSpn4 family transposase -
  ACIVIR_RS08105 - 1574338..1574736 (-) 399 Protein_1557 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6025.02 Da        Isoelectric Point: 8.6616

>NTDB_id=957272 ACIVIR_RS08075 WP_109701449.1 1569905..1570069(-) (comA) [Streptococcus pneumoniae strain 262]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKH

Nucleotide


Download         Length: 165 bp        

>NTDB_id=957272 ACIVIR_RS08075 WP_109701449.1 1569905..1570069(-) (comA) [Streptococcus pneumoniae strain 262]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAACATAACTTTAAAGC
ACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.308

96.296

0.407
  comA Streptococcus pneumoniae Rx1

40.385

96.296

0.389
  comA Streptococcus pneumoniae D39

40.385

96.296

0.389
  comA Streptococcus pneumoniae R6

40.385

96.296

0.389
  comA Streptococcus mitis SK321

40.385

96.296

0.389