Detailed information NTG0957076

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ACIQTD_RS11965
• Genome accession: NZ_CP173185
• Coordinates: 2442990..2443991 (-)
• Length: 333 a.a.
• NCBI ID: WP_404399200.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain MGEL24009
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2437990..2448991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIQTD_RS11930	-	2438278..2438643 (-)	366	WP_003131985.1	MerR family transcriptional regulator	-
ACIQTD_RS11935	-	2438744..2439181 (-)	438	WP_010906378.1	low molecular weight protein-tyrosine-phosphatase	-
ACIQTD_RS11940	-	2439325..2439489 (-)	165	WP_003131988.1	hypothetical protein	-
ACIQTD_RS11945	-	2439594..2440211 (-)	618	WP_017865237.1	AAA family ATPase	-
ACIQTD_RS11950	-	2440211..2441392 (-)	1182	WP_270250596.1	ABC transporter permease	-
ACIQTD_RS11955	-	2441459..2441743 (-)	285	WP_226898144.1	hypothetical protein	-
ACIQTD_RS11960	-	2441969..2442853 (-)	885	WP_012898698.1	XRE/MutR family transcriptional regulator	-
ACIQTD_RS11965	ruvB	2442990..2443991 (-)	1002	WP_404399200.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACIQTD_RS11970	ruvA	2444118..2444711 (-)	594	WP_270250595.1	Holliday junction branch migration protein RuvA	Machinery gene
ACIQTD_RS11975	hexB	2444824..2446815 (-)	1992	WP_270250592.1	DNA mismatch repair endonuclease MutL	Machinery gene
ACIQTD_RS11980	-	2446944..2447639 (-)	696	WP_023190211.1	hypothetical protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37652.22 Da
• Isoelectric Point: 4.5830

>NTDB_id=957076 ACIQTD_RS11965 WP_404399200.1 2442990..2443991(-) (ruvB) [Lactococcus lactis subsp. lactis strain MGEL24009]
MNDILNKEPMEEDYGIEKSLRPQFFNQYIGQDKVKEQLEIFIKAAKMREEVLDHVLLFGPPGLGKTTMAFVIANELGVNI
KQTAGPAIEKPGDLVAILNELEPGDVLFIDEIHRMPMQVEEVLYSAMEDFYIDIMLGSGDGSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGISSHMEYYQERDLEEIVKRTADIFEVEVIDNAALEIALRSRGTPRIANRLLKRVRDFAQIMGDGRVD
KAITDKALSILDVDAAGLDYIDQKILRTMIEMYRGGPVGIGTLAVNIAEDRETVEDMYEPYLIQKGFLMRTKQGRKVTQR
AYEHLGYVYNEED

Nucleotide

• Length: 1002 bp

>NTDB_id=957076 ACIQTD_RS11965 WP_404399200.1 2442990..2443991(-) (ruvB) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGAACGATATATTAAACAAAGAGCCAATGGAAGAAGATTACGGTATTGAAAAATCTCTACGTCCGCAATTTTTTAATCA
GTATATTGGTCAAGATAAAGTCAAAGAACAATTAGAAATCTTTATTAAAGCAGCAAAAATGCGTGAAGAAGTTTTGGATC
ACGTACTACTTTTTGGTCCTCCGGGACTTGGTAAGACAACAATGGCATTTGTCATTGCCAATGAGTTGGGAGTTAATATT
AAACAAACAGCGGGTCCTGCCATTGAAAAGCCAGGAGATTTAGTTGCGATTTTGAATGAATTGGAACCTGGCGATGTGCT
ATTTATTGATGAAATTCATCGGATGCCAATGCAAGTTGAAGAAGTTCTTTATAGCGCTATGGAAGATTTCTACATTGATA
TTATGCTTGGTTCTGGTGATGGTTCACGCTCGGTTCATTTAGATTTGCCGCCATTTACTCTAGTTGGGGCAACAACAAGA
GCTGGAATGCTTTCGAATCCATTGCGTGCCCGTTTTGGAATTTCAAGTCATATGGAGTATTATCAAGAGCGTGATTTAGA
AGAAATTGTTAAAAGAACAGCTGATATTTTTGAAGTCGAAGTTATTGATAATGCCGCTTTAGAGATTGCTTTACGTAGTC
GAGGGACTCCACGGATTGCCAATCGTTTACTTAAACGAGTGCGTGATTTTGCTCAAATAATGGGGGATGGCCGAGTGGAT
AAAGCAATTACCGATAAGGCCTTGTCTATTCTTGATGTTGATGCCGCTGGTTTGGACTATATTGATCAAAAAATTCTCCG
CACAATGATTGAAATGTACCGCGGTGGTCCTGTTGGGATTGGAACTTTGGCGGTAAATATTGCCGAAGACCGTGAAACGG
TCGAGGATATGTATGAACCTTATTTGATTCAAAAAGGATTTTTGATGAGAACTAAACAGGGACGTAAGGTGACCCAAAGA
GCCTATGAACACTTAGGTTACGTTTATAATGAAGAAGATTGA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae D39	78.614	99.7	0.784
ruvB	Streptococcus pneumoniae TIGR4	78.313	99.7	0.781
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.491	96.697	0.595
ruvB	Helicobacter pylori 26695	51.242	96.697	0.495
ruvB	Synechocystis sp. PCC 6803	51.613	93.093	0.48