Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACIQTD_RS11970 Genome accession   NZ_CP173185
Coordinates   2444118..2444711 (-) Length   197 a.a.
NCBI ID   WP_270250595.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2439118..2449711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS11940 - 2439325..2439489 (-) 165 WP_003131988.1 hypothetical protein -
  ACIQTD_RS11945 - 2439594..2440211 (-) 618 WP_017865237.1 AAA family ATPase -
  ACIQTD_RS11950 - 2440211..2441392 (-) 1182 WP_270250596.1 ABC transporter permease -
  ACIQTD_RS11955 - 2441459..2441743 (-) 285 WP_226898144.1 hypothetical protein -
  ACIQTD_RS11960 - 2441969..2442853 (-) 885 WP_012898698.1 XRE/MutR family transcriptional regulator -
  ACIQTD_RS11965 ruvB 2442990..2443991 (-) 1002 WP_404399200.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACIQTD_RS11970 ruvA 2444118..2444711 (-) 594 WP_270250595.1 Holliday junction branch migration protein RuvA Machinery gene
  ACIQTD_RS11975 hexB 2444824..2446815 (-) 1992 WP_270250592.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACIQTD_RS11980 - 2446944..2447639 (-) 696 WP_023190211.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21148.69 Da        Isoelectric Point: 5.8218

>NTDB_id=957077 ACIQTD_RS11970 WP_270250595.1 2444118..2444711(-) (ruvA) [Lactococcus lactis subsp. lactis strain MGEL24009]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALVNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLEAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=957077 ACIQTD_RS11970 WP_270250595.1 2444118..2444711(-) (ruvA) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGGTGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACGGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGAGGCTGGACCTGCTGGAAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.606

100

0.609
  ruvA Streptococcus pneumoniae R6

60.606

100

0.609
  ruvA Streptococcus pneumoniae D39

60.606

100

0.609
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462