Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACIQTD_RS04085 Genome accession   NZ_CP173185
Coordinates   846147..846452 (+) Length   101 a.a.
NCBI ID   WP_052062168.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 841147..851452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS04075 - 842587..842901 (+) 315 WP_058204881.1 helix-turn-helix transcriptional regulator -
  ACIQTD_RS04080 glf 843040..844176 (+) 1137 WP_058204882.1 UDP-galactopyranose mutase -
  ACIQTD_RS04085 ssbB 846147..846452 (+) 306 WP_052062168.1 single-stranded DNA-binding protein Machinery gene
  ACIQTD_RS04090 - 846419..846586 (+) 168 WP_161935051.1 hypothetical protein -
  ACIQTD_RS04095 - 847235..847567 (-) 333 WP_250354508.1 hypothetical protein -
  ACIQTD_RS04100 - 847669..847914 (-) 246 WP_129881529.1 hypothetical protein -
  ACIQTD_RS04105 pepV 848390..849808 (+) 1419 WP_017864349.1 dipeptidase PepV -
  ACIQTD_RS04110 acpS 849911..850270 (+) 360 WP_021468491.1 holo-ACP synthase -
  ACIQTD_RS04115 alr 850315..851418 (+) 1104 WP_003132601.1 alanine racemase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11403.15 Da        Isoelectric Point: 10.1086

>NTDB_id=957010 ACIQTD_RS04085 WP_052062168.1 846147..846452(+) (ssbB) [Lactococcus lactis subsp. lactis strain MGEL24009]
MNNTHQIGHLSKDLELKKKPSNKSYVHFSIVVNRKSKNANGNCEADFIPCILWGEKAETLVKYASKVNRIGIDGELRTNP
IKTLQESNGLVWKFSSIILSF

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957010 ACIQTD_RS04085 WP_052062168.1 846147..846452(+) (ssbB) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGAATAACACACACCAAATCGGACATTTGTCAAAAGACCTTGAACTTAAAAAGAAGCCTTCTAATAAAAGCTATGTTCA
TTTTTCGATTGTGGTAAACCGTAAGTCTAAAAATGCAAATGGCAATTGTGAAGCTGACTTTATTCCATGTATTCTTTGGG
GAGAAAAAGCAGAAACACTTGTGAAATATGCTTCAAAAGTAAATAGAATTGGAATTGATGGTGAATTACGAACTAATCCT
ATAAAGACTCTTCAGGAGTCAAACGGTTTAGTATGGAAGTTCTCGTCAATAATTTTGAGTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

52.564

77.228

0.406
  ssbB/cilA Streptococcus pneumoniae Rx1

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40.404

98.02

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40.404

98.02

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

98.02

0.386
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.489

93.069

0.386
  ssbB/cilA Streptococcus mitis SK321

41.489

93.069

0.386