Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LGMS210922A_RS05055 Genome accession   NZ_AP026069
Coordinates   1024277..1025146 (-) Length   289 a.a.
NCBI ID   WP_265148857.1    Uniprot ID   A0AA43PGF9
Organism   Lactococcus garvieae strain MS210922A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1019277..1030146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGMS210922A_RS05040 (LGMS210922A_09960) - 1020255..1020476 (+) 222 WP_074749946.1 hypothetical protein -
  LGMS210922A_RS05045 (LGMS210922A_09970) trmFO 1020549..1021892 (-) 1344 WP_265148855.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LGMS210922A_RS05050 (LGMS210922A_09980) topA 1021938..1024088 (-) 2151 WP_023888984.1 type I DNA topoisomerase -
  LGMS210922A_RS05055 (LGMS210922A_09990) dprA 1024277..1025146 (-) 870 WP_265148857.1 DNA-processing protein DprA Machinery gene
  LGMS210922A_RS05060 (LGMS210922A_10000) budA 1025233..1025931 (-) 699 WP_265148859.1 acetolactate decarboxylase -
  LGMS210922A_RS05065 (LGMS210922A_10010) - 1026073..1027797 (-) 1725 WP_004257235.1 ABC transporter permease/substrate binding protein -
  LGMS210922A_RS05070 (LGMS210922A_10020) - 1027790..1028992 (-) 1203 WP_014024780.1 quaternary amine ABC transporter ATP-binding protein -
  LGMS210922A_RS05075 (LGMS210922A_10030) - 1029196..1029816 (-) 621 WP_004257227.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32860.03 Da        Isoelectric Point: 9.5626

>NTDB_id=95635 LGMS210922A_RS05055 WP_265148857.1 1024277..1025146(-) (dprA) [Lactococcus garvieae strain MS210922A]
MIRNFEILRLKKAGMSNLGILKLIDYQERHEAKLTLRQLARIAEVKAVPNFIESYKSQDVKRLREQYKTFPSFSILDDIY
PEWLKEMYNPPTLLFYQGNLKLLNFPKLGFVGSREMSKEAPKITYKLIEELKQSFVIVSGLARGVDTSSHVAAIKQQTPT
IAVIGNGLDISYPKENRKLQEYLATHELVLSEYLVGEPPLKFHFPERNRIIAGLSRGIVVVEAKQRSGSLITSRYALEGN
REVFAVPGDILNRNASGCNQLIQQGAAKLITHGQDILDEFYLYEGNFLP

Nucleotide


Download         Length: 870 bp        

>NTDB_id=95635 LGMS210922A_RS05055 WP_265148857.1 1024277..1025146(-) (dprA) [Lactococcus garvieae strain MS210922A]
ATGATTAGAAATTTTGAAATATTGCGTTTGAAAAAAGCAGGAATGTCGAATCTAGGGATTTTGAAACTGATTGACTATCA
AGAGAGGCATGAAGCAAAACTTACTTTACGACAGTTAGCGAGGATTGCAGAAGTCAAAGCTGTTCCTAATTTTATTGAGA
GTTACAAGAGTCAGGATGTAAAACGACTTCGAGAGCAATATAAGACCTTCCCCTCCTTTTCCATCTTAGACGACATTTAT
CCTGAATGGCTGAAAGAAATGTATAATCCCCCGACCCTCCTTTTTTATCAAGGAAATCTTAAGTTGCTTAACTTCCCTAA
ACTCGGATTTGTCGGGAGCCGTGAAATGTCTAAGGAAGCACCTAAAATTACATACAAACTTATTGAGGAATTAAAACAAA
GCTTTGTTATAGTGAGCGGGTTAGCACGAGGTGTTGACACTTCTAGTCATGTAGCTGCTATAAAGCAACAAACACCAACC
ATTGCTGTCATTGGTAACGGTTTAGATATTAGTTATCCAAAAGAAAATCGTAAATTACAAGAGTATTTAGCAACTCATGA
ATTGGTTTTATCAGAATACCTTGTAGGAGAGCCGCCCCTTAAGTTTCATTTTCCAGAGAGAAATAGAATCATTGCGGGTC
TTTCTCGTGGAATTGTCGTTGTTGAAGCAAAGCAACGTAGCGGTAGCCTCATCACAAGTCGTTATGCCTTAGAGGGAAAT
AGAGAAGTATTTGCTGTACCTGGAGATATTTTGAACAGAAATGCCTCTGGCTGTAATCAATTAATCCAGCAAGGTGCAGC
CAAGCTTATTACTCATGGTCAAGATATTTTGGATGAATTTTATTTATATGAAGGTAATTTCCTTCCTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-271)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(2-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

63.958

97.924

0.626
  dprA Streptococcus mutans UA159

56.318

95.848

0.54
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

54.122

96.54

0.522
  dprA/cilB/dalA Streptococcus pneumoniae D39

54.122

96.54

0.522
  dprA/cilB/dalA Streptococcus pneumoniae R6

54.122

96.54

0.522
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

54.122

96.54

0.522
  dprA/cilB/dalA Streptococcus mitis SK321

54.122

96.54

0.522
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

53.405

96.54

0.516
  dprA Haemophilus influenzae Rd KW20

37.329

100

0.377

Multiple sequence alignment