Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   ACF1RT_RS08825 Genome accession   NZ_CP172847
Coordinates   1778025..1778921 (-) Length   298 a.a.
NCBI ID   WP_002264125.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1773025..1783921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS08825 (ACF1RT_08825) comR 1778025..1778921 (-) 897 WP_002264125.1 XRE family transcriptional regulator Regulator
  ACF1RT_RS08835 (ACF1RT_08835) - 1779120..1779683 (-) 564 WP_002262912.1 hypothetical protein -
  ACF1RT_RS08840 (ACF1RT_08840) tadA 1779680..1780150 (-) 471 WP_002266500.1 tRNA adenosine(34) deaminase TadA -
  ACF1RT_RS08845 (ACF1RT_08845) - 1780150..1780926 (-) 777 WP_002351835.1 MBL fold metallo-hydrolase -
  ACF1RT_RS08850 (ACF1RT_08850) - 1781003..1782016 (-) 1014 WP_002262915.1 YdcF family protein -
  ACF1RT_RS08855 (ACF1RT_08855) - 1782443..1783006 (-) 564 WP_002262916.1 nucleotidyltransferase family protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34683.95 Da        Isoelectric Point: 4.6439

>NTDB_id=954459 ACF1RT_RS08825 WP_002264125.1 1778025..1778921(-) (comR) [Streptococcus mutans strain DPC6143]
MSIKETIGKKIREVREKKGLSREQLCDTEEELTVRQLVRIELGQSLPSIVKLEYIAKVLETDLGTLLAGESITIPEEYFT
MKYQLFKFPSYGDSERLAQKTQMIEDIYEKYFDVLTEEELFTLELLDNSLDYISTRKTAAAEDIFEDFFKQLLTKKHYSF
NDLLLAKYYAIQCQDKDYKEITLQILETTILQQDVSGDEYYNIELLGVLTAIAGVYLDHGLYYKLKALVVKMDVIISKTQ
QYSIKPGLLMFEAKYYLYAEYDKKKAKECYDLAALLAQNFGDKVLEANIFSERKKDQL

Nucleotide


Download         Length: 897 bp        

>NTDB_id=954459 ACF1RT_RS08825 WP_002264125.1 1778025..1778921(-) (comR) [Streptococcus mutans strain DPC6143]
ATGAGCATAAAAGAAACAATTGGGAAAAAGATTAGGGAAGTTCGTGAGAAAAAGGGTTTATCACGTGAACAATTGTGTGA
CACTGAAGAAGAACTAACAGTTCGCCAGTTGGTACGTATCGAGCTAGGACAGTCTTTACCCTCTATTGTAAAATTGGAAT
ACATTGCAAAAGTATTAGAAACTGATTTAGGAACTTTACTTGCAGGTGAAAGTATTACTATACCAGAAGAGTATTTCACT
ATGAAGTATCAACTTTTCAAATTTCCCAGTTATGGTGATTCTGAACGCTTAGCTCAAAAAACGCAAATGATTGAAGATAT
TTATGAAAAGTATTTTGATGTTTTGACGGAGGAGGAACTTTTTACTTTAGAATTACTAGATAACTCTCTAGATTATATTT
CAACAAGAAAAACGGCAGCAGCAGAAGATATCTTTGAAGATTTTTTTAAACAACTTTTAACAAAAAAACATTATTCTTTC
AATGATTTATTATTGGCAAAGTACTATGCTATTCAATGTCAGGATAAAGATTATAAGGAAATAACCTTGCAGATACTCGA
AACGACTATTTTACAGCAAGATGTCTCAGGTGATGAGTATTACAATATTGAACTTTTAGGAGTGTTGACAGCTATAGCAG
GAGTTTATTTAGATCATGGTTTATATTATAAATTAAAGGCTTTGGTCGTTAAAATGGATGTTATCATCTCTAAAACGCAA
CAATATAGTATTAAACCTGGATTATTAATGTTTGAAGCAAAATATTATCTCTATGCTGAATATGATAAAAAGAAAGCAAA
GGAATGTTATGATTTAGCTGCTTTACTAGCACAGAATTTTGGAGATAAAGTTTTAGAAGCTAATATCTTTTCTGAAAGAA
AAAAGGATCAGCTTTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)

Helix-turn-helix (HTH_3)

(11-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius SK126

42.475

100

0.426
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.424

99.664

0.423
  comR Streptococcus thermophilus LMG 18311

41.806

100

0.419
  comR Streptococcus salivarius strain HSISS4

41.806

100

0.419
  comR Streptococcus thermophilus LMD-9

41.472

100

0.416
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

40.404

99.664

0.403