Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACHGMI_RS24815 Genome accession   NZ_CP172417
Coordinates   4548904..4550106 (+) Length   400 a.a.
NCBI ID   WP_017695783.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 4543904..4555106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS24795 walK 4543985..4545820 (+) 1836 WP_017695786.1 cell wall metabolism sensor histidine kinase WalK -
  ACHGMI_RS24800 walH 4545810..4547177 (+) 1368 WP_026113653.1 WalRK two-component regulatory system regulator WalH -
  ACHGMI_RS24805 walI 4547164..4548006 (+) 843 WP_017695784.1 WalRK two-component regulatory system regulator WalI -
  ACHGMI_RS24810 vicX 4548028..4548822 (+) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  ACHGMI_RS24815 htrA 4548904..4550106 (+) 1203 WP_017695783.1 serine protease HtrC Regulator
  ACHGMI_RS24820 - 4550126..4550256 (+) 131 Protein_4839 hypothetical protein -
  ACHGMI_RS24825 - 4550284..4550436 (+) 153 Protein_4840 ATP-binding protein -
  ACHGMI_RS24830 rocR 4550418..4551803 (-) 1386 WP_017695782.1 arginine utilization regulatory protein RocR -
  ACHGMI_RS24835 rocD 4552041..4553246 (+) 1206 WP_017695781.1 ornithine aminotransferase -
  ACHGMI_RS24840 rocE 4553469..4554872 (+) 1404 WP_017695780.1 amino acid permease -

Sequence


Protein


Download         Length: 400 a.a.        Molecular weight: 42885.74 Da        Isoelectric Point: 5.5235

>NTDB_id=953782 ACHGMI_RS24815 WP_017695783.1 4548904..4550106(+) (htrA) [Bacillus subtilis strain AKPS2]
MVNYEREEEHTTPEQPKRSKKGYFLSSLIGVIVGAVLMAFIMPYLSNEGLDTGVLDQQQNNNGRESIRTVNVSVNNAATK
IVSNVSPAVVGVVNIQKSDIWGESGEAGSGSGVIYKKNDHSAYVVTNHHVIEGASQIEISLKDGSRVPADLVGSDQLMDL
AVLRVKSDKIKAVADFGNSDKVKSGEPVIAIGNPLGLEFAGSVTQGVISGTERAIPVDSNGDGQPDWNAEVLQTDAAINP
GNSGGALLNMDGKVIGINSMKIAESAVEGIGLSIPSKLVIPVIEDLERYGKVKRPFLGIEMKSLSDIASYHWYETLKLPK
NVTNGVVVMGVDAFSPAAKAGLKELDVITEFDGYKVNDIVDLRKRLYQKKVGDWVKVKFYRGGKEKSVDIKLSSADQLGS

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=953782 ACHGMI_RS24815 WP_017695783.1 4548904..4550106(+) (htrA) [Bacillus subtilis strain AKPS2]
ATGGTGAATTATGAACGTGAGGAAGAACATACTACTCCTGAACAGCCAAAGAGAAGCAAAAAAGGATATTTTCTTTCGAG
TCTGATTGGCGTGATTGTCGGTGCCGTATTAATGGCGTTTATCATGCCGTACCTTTCAAATGAAGGGCTGGATACAGGCG
TCTTAGATCAGCAGCAAAACAACAACGGCCGGGAATCAATCAGGACGGTGAATGTCAGTGTCAACAATGCCGCCACCAAG
ATTGTCAGCAATGTGTCGCCCGCCGTTGTCGGTGTTGTGAACATCCAAAAATCAGATATTTGGGGAGAGAGCGGCGAGGC
TGGGAGCGGCTCAGGCGTCATCTATAAGAAAAATGACCATTCCGCTTATGTCGTGACCAACCATCATGTCATCGAAGGCG
CTTCCCAAATTGAAATCAGCTTGAAAGACGGATCGCGTGTACCAGCTGATCTTGTCGGCAGCGACCAGCTGATGGACCTT
GCCGTTTTACGGGTGAAAAGCGATAAAATTAAAGCAGTCGCCGATTTCGGAAATTCAGATAAAGTGAAGTCTGGGGAGCC
GGTTATTGCGATCGGGAACCCGTTAGGCCTTGAGTTTGCTGGCTCTGTCACACAAGGCGTCATCTCGGGTACGGAGAGGG
CGATCCCAGTAGATTCAAACGGTGATGGACAGCCTGACTGGAACGCAGAAGTCCTGCAAACAGATGCGGCCATTAACCCT
GGGAACAGCGGCGGCGCTTTGTTAAATATGGATGGGAAGGTCATTGGCATCAATTCAATGAAAATTGCCGAGTCAGCGGT
TGAAGGGATTGGCCTGTCCATTCCGTCTAAGCTCGTGATCCCTGTGATAGAGGATTTAGAGAGATACGGAAAGGTCAAAC
GCCCGTTCCTTGGCATTGAGATGAAATCCCTAAGCGACATCGCAAGCTATCATTGGTATGAAACATTAAAGCTTCCTAAG
AACGTCACCAATGGAGTGGTTGTGATGGGTGTAGACGCCTTTTCACCTGCCGCAAAAGCGGGGCTGAAGGAACTGGATGT
CATCACGGAATTTGACGGATACAAAGTAAATGATATTGTTGACCTGCGAAAACGGCTTTATCAGAAAAAAGTCGGTGACT
GGGTGAAGGTGAAGTTTTATCGCGGCGGAAAAGAAAAATCTGTTGATATCAAGCTGTCCTCCGCAGACCAATTAGGCAGT
TAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

43.434

99

0.43

  htrA Streptococcus mitis NCTC 12261

43.523

96.5

0.42

  htrA Streptococcus gordonii str. Challis substr. CH1

41.397

100

0.415

  htrA Streptococcus pneumoniae TIGR4

45.758

82.5

0.378

  htrA Streptococcus pneumoniae D39

45.758

82.5

0.378

  htrA Streptococcus pneumoniae Rx1

45.758

82.5

0.378

  htrA Streptococcus pneumoniae R6

45.758

82.5

0.378