Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | V8V48_RS05150 | Genome accession | NZ_CP146481 |
| Coordinates | 1068447..1068896 (+) | Length | 149 a.a. |
| NCBI ID | WP_412487018.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain MS1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1063447..1073896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V8V48_RS05100 (V8V48_05100) | - | 1064340..1065086 (-) | 747 | WP_412487011.1 | XRE family transcriptional regulator | - |
| V8V48_RS05105 (V8V48_05105) | - | 1065251..1065508 (+) | 258 | WP_412487012.1 | DUF739 family protein | - |
| V8V48_RS05110 (V8V48_05110) | - | 1065513..1066273 (+) | 761 | Protein_975 | Rha family transcriptional regulator | - |
| V8V48_RS05115 (V8V48_05115) | - | 1066284..1066493 (+) | 210 | WP_412487013.1 | pathogenicity island protein | - |
| V8V48_RS05120 (V8V48_05120) | - | 1066497..1066790 (+) | 294 | WP_017722684.1 | DUF771 domain-containing protein | - |
| V8V48_RS05125 (V8V48_05125) | - | 1066803..1066976 (+) | 174 | WP_345965825.1 | hypothetical protein | - |
| V8V48_RS05130 (V8V48_05130) | - | 1067056..1067319 (+) | 264 | WP_412487014.1 | DUF1108 family protein | - |
| V8V48_RS05135 (V8V48_05135) | - | 1067259..1067555 (+) | 297 | WP_412487015.1 | hypothetical protein | - |
| V8V48_RS05140 (V8V48_05140) | - | 1067548..1067802 (+) | 255 | WP_412487016.1 | DUF2483 family protein | - |
| V8V48_RS05145 (V8V48_05145) | - | 1067795..1068454 (+) | 660 | WP_412487017.1 | ERF family protein | - |
| V8V48_RS05150 (V8V48_05150) | ssbA | 1068447..1068896 (+) | 450 | WP_412487018.1 | single-stranded DNA-binding protein | Machinery gene |
| V8V48_RS05155 (V8V48_05155) | - | 1068922..1069593 (+) | 672 | WP_412487019.1 | putative HNHc nuclease | - |
| V8V48_RS05160 (V8V48_05160) | - | 1069586..1070317 (+) | 732 | WP_412487020.1 | helix-turn-helix domain-containing protein | - |
| V8V48_RS05165 (V8V48_05165) | - | 1070328..1071101 (+) | 774 | WP_412487021.1 | ATP-binding protein | - |
| V8V48_RS05170 (V8V48_05170) | - | 1071095..1071268 (+) | 174 | WP_412487022.1 | hypothetical protein | - |
| V8V48_RS05175 (V8V48_05175) | - | 1071269..1071487 (+) | 219 | WP_122062668.1 | hypothetical protein | - |
| V8V48_RS05180 (V8V48_05180) | - | 1071498..1071908 (+) | 411 | WP_412487023.1 | RusA family crossover junction endodeoxyribonuclease | - |
| V8V48_RS05185 (V8V48_05185) | - | 1071901..1072098 (+) | 198 | WP_107551283.1 | hypothetical protein | - |
| V8V48_RS05190 (V8V48_05190) | - | 1072111..1072482 (+) | 372 | WP_412487024.1 | SA1788 family PVL leukocidin-associated protein | - |
| V8V48_RS05195 (V8V48_05195) | - | 1072690..1073025 (-) | 336 | WP_107551281.1 | DUF4870 domain-containing protein | - |
| V8V48_RS05200 (V8V48_05200) | - | 1073144..1073314 (+) | 171 | WP_412487063.1 | DUF1381 domain-containing protein | - |
| V8V48_RS05205 (V8V48_05205) | rinB | 1073344..1073490 (+) | 147 | WP_158262913.1 | transcriptional activator RinB | - |
| V8V48_RS05210 (V8V48_05210) | - | 1073504..1073752 (+) | 249 | WP_412487025.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16588.31 Da Isoelectric Point: 7.0167
>NTDB_id=942839 V8V48_RS05150 WP_412487018.1 1068447..1068896(+) (ssbA) [Staphylococcus xylosus strain MS1]
MINRVVLVGRLTKDPEFRTTPSGVNIANFTLAVNRTFTNAQGEREADFINVVVFRKQAENVNNYLFKGHLAGVDGRIQSR
SYENKEGQRVFVTEVVADSVQFLEPKNNGQANNVSKGQQTGTNNQRSSNDNPFANNNGPIDIKDDDLPF
MINRVVLVGRLTKDPEFRTTPSGVNIANFTLAVNRTFTNAQGEREADFINVVVFRKQAENVNNYLFKGHLAGVDGRIQSR
SYENKEGQRVFVTEVVADSVQFLEPKNNGQANNVSKGQQTGTNNQRSSNDNPFANNNGPIDIKDDDLPF
Nucleotide
Download Length: 450 bp
>NTDB_id=942839 V8V48_RS05150 WP_412487018.1 1068447..1068896(+) (ssbA) [Staphylococcus xylosus strain MS1]
ATGATTAATAGAGTTGTATTAGTAGGACGTTTAACGAAAGACCCAGAATTCAGAACAACACCATCTGGTGTAAATATTGC
AAACTTCACCTTAGCTGTTAATAGAACATTTACAAATGCACAAGGTGAACGAGAAGCAGACTTTATCAATGTAGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAATTATTTATTCAAAGGTCATTTAGCTGGTGTTGATGGTCGTATTCAATCACGT
AGCTATGAGAATAAAGAGGGGCAACGTGTGTTTGTTACAGAAGTTGTCGCAGACAGTGTTCAATTCTTGGAACCAAAAAA
CAACGGACAGGCAAACAACGTATCTAAAGGACAACAGACAGGCACGAATAACCAACGTTCAAGCAATGATAACCCATTTG
CTAATAACAATGGACCTATTGATATTAAAGATGATGATTTACCATTTTAA
ATGATTAATAGAGTTGTATTAGTAGGACGTTTAACGAAAGACCCAGAATTCAGAACAACACCATCTGGTGTAAATATTGC
AAACTTCACCTTAGCTGTTAATAGAACATTTACAAATGCACAAGGTGAACGAGAAGCAGACTTTATCAATGTAGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAATTATTTATTCAAAGGTCATTTAGCTGGTGTTGATGGTCGTATTCAATCACGT
AGCTATGAGAATAAAGAGGGGCAACGTGTGTTTGTTACAGAAGTTGTCGCAGACAGTGTTCAATTCTTGGAACCAAAAAA
CAACGGACAGGCAAACAACGTATCTAAAGGACAACAGACAGGCACGAATAACCAACGTTCAAGCAATGATAACCCATTTG
CTAATAACAATGGACCTATTGATATTAAAGATGATGATTTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.143 |
100 |
0.718 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.591 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.559 |
74.497 |
0.436 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.268 |
100 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
36.913 |
100 |
0.369 |
| ssb | Vibrio cholerae strain A1552 |
31.214 |
100 |
0.362 |