Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V7R83_RS01575 Genome accession   NZ_CP146288
Coordinates   406294..406806 (+) Length   170 a.a.
NCBI ID   WP_040532115.1    Uniprot ID   -
Organism   Lautropia mirabilis ATCC 51599     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401294..411806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R83_RS01560 (V7R83_01560) - 401788..402768 (-) 981 WP_005674916.1 molybdopterin dinucleotide binding domain-containing protein -
  V7R83_RS01565 (V7R83_01565) - 402781..404523 (-) 1743 WP_005674917.1 molybdopterin-dependent oxidoreductase -
  V7R83_RS01570 (V7R83_01570) - 404897..405802 (-) 906 WP_005674918.1 hypothetical protein -
  V7R83_RS01575 (V7R83_01575) pilA 406294..406806 (+) 513 WP_040532115.1 pilin Machinery gene
  V7R83_RS01580 (V7R83_01580) - 407140..407835 (+) 696 WP_126348025.1 hypothetical protein -
  V7R83_RS01585 (V7R83_01585) - 407924..409189 (-) 1266 WP_083799583.1 DNA-processing protein DprA -
  V7R83_RS01590 (V7R83_01590) - 409943..411646 (-) 1704 WP_040530219.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17703.38 Da        Isoelectric Point: 9.0245

>NTDB_id=942550 V7R83_RS01575 WP_040532115.1 406294..406806(+) (pilA) [Lautropia mirabilis ATCC 51599]
MLKQVQKGFTLIELMIVVAIIGILAAVAIPAYQDYTIRARVSEGLSLAAAAKLNVAELAAGGQNDAVTTGYGTGYNPPSK
STNVDQVTITPATGEISITYRTRVAAKTENLLVLTPFAGANGLPDGTKAFSPVQDAIQWRCRANGVASPVTITGALSPTL
PTRFAPAECR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=942550 V7R83_RS01575 WP_040532115.1 406294..406806(+) (pilA) [Lautropia mirabilis ATCC 51599]
ATGCTGAAACAGGTTCAAAAAGGTTTCACCCTGATCGAGCTGATGATCGTCGTGGCGATCATCGGTATTCTGGCCGCCGT
GGCCATCCCGGCTTACCAGGACTACACGATCCGCGCTCGCGTGTCGGAAGGCCTGTCGCTGGCTGCTGCTGCCAAGCTGA
ACGTGGCAGAGCTTGCTGCTGGTGGTCAGAATGATGCCGTGACGACCGGGTATGGCACGGGCTATAACCCGCCCAGCAAG
TCCACCAACGTTGATCAGGTGACGATTACGCCGGCTACCGGCGAAATCTCGATCACGTATCGTACTCGTGTCGCCGCCAA
GACCGAGAACCTTCTGGTTCTGACTCCGTTTGCTGGTGCGAATGGTCTGCCGGACGGTACTAAAGCATTCAGCCCGGTTC
AGGATGCCATCCAATGGCGTTGCCGTGCTAACGGTGTAGCGTCTCCTGTTACGATTACCGGAGCCCTGTCTCCGACGCTG
CCGACGCGCTTTGCCCCTGCCGAGTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(38-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

49.425

100

0.506
  pilA2 Legionella pneumophila str. Paris

48.193

97.647

0.471
  pilA2 Legionella pneumophila strain ERS1305867

47.59

97.647

0.465
  comP Acinetobacter baylyi ADP1

39.08

100

0.4
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

34.555

100

0.388
  pilE Neisseria gonorrhoeae strain FA1090

35.196

100

0.371