Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V5M36_RS01395 Genome accession   NZ_CP145906
Coordinates   311252..312310 (+) Length   352 a.a.
NCBI ID   WP_338561255.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306252..317310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS01380 (V5M36_01380) mraY 306502..307620 (+) 1119 WP_338561249.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  V5M36_RS01385 (V5M36_01385) - 307687..308493 (+) 807 WP_338561251.1 putative RNA methyltransferase -
  V5M36_RS01390 (V5M36_01390) ponA 308553..311090 (-) 2538 WP_338561253.1 penicillin-binding protein PBP1a -
  V5M36_RS01395 (V5M36_01395) comM 311252..312310 (+) 1059 WP_338561255.1 pilus assembly protein PilM Machinery gene
  V5M36_RS01400 (V5M36_01400) comN 312310..312936 (+) 627 WP_338561258.1 PilN domain-containing protein Machinery gene
  V5M36_RS01405 (V5M36_01405) comO 312933..313655 (+) 723 WP_338561260.1 type 4a pilus biogenesis protein PilO Machinery gene
  V5M36_RS01410 (V5M36_01410) pilP 313658..314185 (+) 528 WP_338563969.1 pilus assembly protein PilP Machinery gene
  V5M36_RS01415 (V5M36_01415) comQ 314250..316907 (+) 2658 WP_338563971.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38734.21 Da        Isoelectric Point: 4.3952

>NTDB_id=941050 V5M36_RS01395 WP_338561255.1 311252..312310(+) (comM) [Acinetobacter sp. KS-LM10]
MLGLYRKPNKGLVGVDISSTSVKLLELSVKNGRYWVESYGLSPLVDGSVVEKNILNPDNVADALERAMNIANPQSSNVAI
AVPTSMVIHKVIEMDADMSDEEREVQIRMDAEQYIPFPLDEVSLDFEVLTEKLNASNRVNVLLVATRTENVDSRVEVLDL
VGLNPKVAEVESYALERSFEVFSDTLPVGASLVGVLDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTQDVQNRYGLSFDE
AGRAKKDSTLPDDFETEVLMPFLDAVIQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLSKLMQQKLGCRVTVANPFL
QMGFSPQIDLKKIENDAPSLLVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=941050 V5M36_RS01395 WP_338561255.1 311252..312310(+) (comM) [Acinetobacter sp. KS-LM10]
GTGCTCGGACTCTATCGTAAGCCAAATAAGGGATTGGTGGGAGTAGATATTAGTTCTACTTCTGTAAAGTTATTGGAATT
GTCTGTAAAGAATGGGCGCTATTGGGTTGAGAGCTATGGCTTGAGTCCACTAGTCGACGGTAGTGTTGTCGAAAAGAACA
TTCTTAATCCTGACAACGTTGCAGATGCTTTAGAGCGCGCAATGAATATTGCCAATCCGCAATCCTCAAATGTTGCAATT
GCTGTGCCAACGTCCATGGTCATTCATAAGGTGATCGAGATGGATGCGGACATGTCGGATGAAGAACGTGAAGTTCAAAT
TCGAATGGATGCAGAGCAATATATTCCATTTCCATTAGATGAAGTGAGTCTCGATTTCGAAGTGCTTACTGAAAAACTGA
ATGCGTCAAACCGTGTCAATGTTTTACTGGTGGCTACGCGTACCGAGAATGTTGATTCAAGGGTCGAGGTTTTAGACCTT
GTTGGATTGAACCCTAAAGTCGCCGAAGTTGAAAGTTATGCATTAGAACGTAGTTTTGAAGTATTTTCCGATACTTTGCC
TGTTGGGGCGAGTTTAGTGGGTGTACTGGACATCGGTCATACCATGACCACACTTTCTGTGATGCAAAACGGAAAGATTA
TCTATACACGAGAGCAGGTGTTTGGTGGGAAGCAGCTGACTCAAGATGTACAAAATCGTTATGGCTTATCCTTTGACGAA
GCTGGACGAGCAAAAAAAGACAGCACTTTGCCAGATGATTTCGAAACTGAAGTCTTAATGCCATTTTTAGATGCAGTCAT
TCAGCAGGCTGCGCGCTCATTACAATTCTTTTTCTCATCATCTCAGTTTAACGAAATTGATCATATTTTATTGGCAGGAG
GGAATGCCAATATTCCTGGATTGTCAAAACTCATGCAGCAGAAGCTAGGATGCCGAGTCACTGTTGCAAACCCATTTTTA
CAAATGGGTTTTTCTCCTCAAATTGACTTAAAAAAAATAGAAAATGATGCACCTTCTTTATTGGTGGCATGTGGTCTTGC
ATTGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

82.102

100

0.821
  pilM Acinetobacter baumannii D1279779

81.534

100

0.815
  comM Acinetobacter baylyi ADP1

77.841

100

0.778
  pilM Legionella pneumophila strain ERS1305867

42.535

100

0.429