Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   V5M36_RS01405 Genome accession   NZ_CP145906
Coordinates   312933..313655 (+) Length   240 a.a.
NCBI ID   WP_338561260.1    Uniprot ID   -
Organism   Acinetobacter sp. KS-LM10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307933..318655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5M36_RS01390 (V5M36_01390) ponA 308553..311090 (-) 2538 WP_338561253.1 penicillin-binding protein PBP1a -
  V5M36_RS01395 (V5M36_01395) comM 311252..312310 (+) 1059 WP_338561255.1 pilus assembly protein PilM Machinery gene
  V5M36_RS01400 (V5M36_01400) comN 312310..312936 (+) 627 WP_338561258.1 PilN domain-containing protein Machinery gene
  V5M36_RS01405 (V5M36_01405) comO 312933..313655 (+) 723 WP_338561260.1 type 4a pilus biogenesis protein PilO Machinery gene
  V5M36_RS01410 (V5M36_01410) pilP 313658..314185 (+) 528 WP_338563969.1 pilus assembly protein PilP Machinery gene
  V5M36_RS01415 (V5M36_01415) comQ 314250..316907 (+) 2658 WP_338563971.1 type IV pilus secretin PilQ Machinery gene
  V5M36_RS01420 (V5M36_01420) aroK 316944..317486 (+) 543 WP_338561263.1 shikimate kinase AroK -
  V5M36_RS01425 (V5M36_01425) aroB 317511..318593 (+) 1083 WP_338561265.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27175.05 Da        Isoelectric Point: 5.7868

>NTDB_id=941052 V5M36_RS01405 WP_338561260.1 312933..313655(+) (comO) [Acinetobacter sp. KS-LM10]
MSRNDLDDFNSEVAKPKKKSINVQKFFQQFNTLDSSNYGGWPSSVKMTCWIFLCVVIGVIGYFLVLKPKIEEINFAHEKE
KSLLVEFKEKFSKLRNLQQYQTQLQQMEMTFNQQLELLPKETEIPSLVEDINLTGVKSGLKFKNIRLEPEVAQEFFIEQP
ISIETTGDYHSFGQFVSGIAGLSRILTLHDFVITATPSQDKKTDIPTVDYSLKAKTYRYVASTDEASNAGVPAAQPAGVQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=941052 V5M36_RS01405 WP_338561260.1 312933..313655(+) (comO) [Acinetobacter sp. KS-LM10]
ATGAGTCGTAATGATCTAGATGATTTCAACTCAGAAGTCGCAAAGCCGAAAAAGAAAAGTATAAATGTTCAGAAATTTTT
TCAACAATTTAACACCTTAGATTCGAGTAATTACGGTGGATGGCCAAGCTCAGTAAAAATGACCTGTTGGATATTTTTAT
GTGTGGTGATTGGCGTGATTGGTTATTTTTTGGTACTCAAACCGAAGATTGAAGAAATCAACTTCGCGCATGAAAAAGAA
AAAAGTTTGCTTGTTGAGTTTAAGGAGAAGTTTTCTAAGCTACGTAATTTGCAACAATACCAAACTCAATTACAGCAAAT
GGAAATGACGTTTAACCAGCAGTTGGAATTACTGCCTAAAGAGACTGAAATTCCGAGTTTGGTTGAGGACATCAACTTAA
CAGGTGTGAAATCAGGGCTTAAATTTAAAAATATTCGTTTAGAACCTGAAGTTGCTCAAGAGTTCTTTATTGAGCAGCCG
ATTTCGATTGAAACCACAGGCGATTATCACTCATTTGGTCAATTCGTCAGTGGAATTGCAGGCTTATCACGTATTTTAAC
CTTACATGATTTCGTGATTACAGCGACACCAAGTCAAGATAAAAAAACCGATATTCCGACTGTTGATTATTCACTTAAAG
CTAAAACCTACCGTTATGTAGCATCTACAGATGAGGCTTCAAATGCTGGTGTACCAGCGGCTCAACCAGCAGGAGTGCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(76-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

64.957

97.5

0.633
  pilO Acinetobacter baumannii D1279779

62.979

97.917

0.617