Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U70_RS07180 Genome accession   NZ_CP145868
Coordinates   1592929..1594899 (-) Length   656 a.a.
NCBI ID   WP_022496731.1    Uniprot ID   A0AB33Z9W3
Organism   Streptococcus salivarius strain KSS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587929..1599899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS07160 (V6U70_07155) amiF 1588432..1589361 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  V6U70_RS07165 (V6U70_07160) amiE 1589354..1590439 (-) 1086 WP_410532295.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS07170 (V6U70_07165) amiD 1590449..1591375 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U70_RS07175 (V6U70_07170) amiC 1591375..1592868 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U70_RS07180 (V6U70_07175) amiA 1592929..1594899 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator
  V6U70_RS07185 (V6U70_07180) amiA 1595081..1597051 (-) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U70_RS07190 (V6U70_07185) pta 1597287..1598270 (-) 984 WP_371482510.1 phosphate acetyltransferase -
  V6U70_RS07195 (V6U70_07190) - 1598284..1599180 (-) 897 WP_049554141.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72885.17 Da        Isoelectric Point: 5.1940

>NTDB_id=940857 V6U70_RS07180 WP_022496731.1 1592929..1594899(-) (amiA) [Streptococcus salivarius strain KSS12]
MKKSKWLALAGVSLLSVGVLVACSSKSNTSSNTYNYVYTADPETLDYLISNKGSTTDAVTNGVDGLLENDKYGNLVPAIA
KDWTVSADGLTYTYKLRKGVKWYTSDGEEYAEVTAKDFVTGLKHAADKKTESIYLAKDSVVGLADYFNGTDKDFSKVGVK
ALDDYTLQYTLKQPEPYWNSKMTYSLFWPVNEEFLKSKGDSFGKSTDPSSILYNGPYILKSLTAKSSIELAKNENYWDKK
NVHFDGIKLSFYDASDQESLVRNFTDGAYSQARLYPTSSNFNSVEKQYKDNIFYTQPSADIGGVGVNIDRQSYNHTSKKT
DAEKDSTKKALLNKDFRQSVNFAIDRTAYSAQLNGEKGAALAVRNLLVKPDFVYAGDKSFGDLVTEKMASYGDEWSGVNF
KDSQDGIFNANKAKAEFNKAKEALQADGVQFPIHLDLPVDQAAKPTVARAQSLKQSVENTLGKENVVVDVHQMSQDDLLN
STLYAANAAAEDWDINISVAWAPDYEDPSTYLDIFKTTASENTKTYMGFDDPNNAAAAQVGLKDFDALVDNAAKETSDLN
VRYERYAEAQAWLEDSSLFMPLMVNKGAAPMVARLTPFSGAYSQVGPKGSDRYFKYLEPQKDVVTKKNYDKARESWLKEK
SKSNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940857 V6U70_RS07180 WP_022496731.1 1592929..1594899(-) (amiA) [Streptococcus salivarius strain KSS12]
ATGAAAAAAAGTAAATGGTTGGCCCTTGCGGGTGTTTCCCTCCTAAGTGTTGGGGTTTTAGTGGCTTGTTCATCAAAATC
AAACACTTCAAGCAATACTTATAACTATGTTTATACTGCTGATCCTGAAACATTGGACTACCTTATTTCCAATAAAGGTT
CAACGACTGATGCTGTGACAAATGGTGTCGATGGCCTTTTGGAAAATGATAAATATGGTAACTTGGTACCTGCTATTGCC
AAGGATTGGACTGTTTCGGCTGATGGTTTGACTTATACTTACAAACTTCGTAAGGGAGTTAAATGGTATACTTCAGACGG
TGAAGAGTATGCGGAAGTAACAGCTAAAGACTTCGTAACAGGTCTTAAGCATGCTGCTGATAAAAAGACAGAGTCAATTT
ACTTGGCAAAAGATTCTGTAGTAGGTCTTGCTGATTATTTCAATGGTACTGATAAAGACTTCTCTAAAGTTGGCGTTAAA
GCTCTTGATGATTACACTCTTCAGTACACACTTAAACAACCAGAACCTTACTGGAATTCTAAGATGACTTATTCTCTCTT
CTGGCCTGTAAATGAAGAGTTCCTTAAGTCAAAAGGGGATAGCTTTGGTAAATCAACAGATCCATCATCTATCCTTTATA
ATGGTCCATACATCCTTAAGTCATTGACAGCTAAATCATCTATTGAATTGGCTAAAAATGAAAACTACTGGGATAAGAAA
AATGTCCACTTCGATGGCATTAAACTTTCTTTCTACGATGCTTCAGACCAAGAATCGCTTGTTCGTAATTTCACTGATGG
CGCTTATAGCCAAGCACGTCTATATCCAACAAGCTCAAACTTTAATTCAGTAGAAAAACAATATAAAGATAATATCTTCT
ATACACAACCATCTGCAGATATTGGTGGGGTTGGTGTTAATATTGACCGTCAGTCTTACAACCATACATCTAAGAAGACT
GATGCTGAGAAAGATTCAACTAAGAAAGCTCTTCTTAACAAGGACTTCCGTCAATCAGTTAACTTTGCTATTGACCGTAC
AGCTTATTCTGCACAACTTAATGGTGAAAAAGGTGCAGCCCTTGCTGTTCGTAACCTTCTCGTGAAACCTGATTTTGTTT
ATGCTGGTGATAAGTCATTCGGTGATTTGGTAACTGAAAAGATGGCTTCATATGGTGACGAGTGGTCAGGTGTTAACTTT
AAAGACAGTCAAGACGGTATCTTCAATGCTAATAAAGCGAAGGCTGAATTTAACAAAGCTAAGGAAGCTCTTCAAGCAGA
TGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAGCAGCTAAACCAACGGTTGCACGTGCACAATCTTTGA
AACAATCTGTTGAAAATACACTTGGTAAAGAAAATGTCGTGGTGGATGTTCATCAAATGTCTCAAGATGATCTTCTAAAT
AGCACATTGTATGCAGCTAATGCAGCAGCAGAAGACTGGGATATCAATATCTCAGTAGCTTGGGCTCCTGACTATGAAGA
TCCATCAACATACCTCGATATCTTCAAAACAACAGCTAGTGAGAACACAAAAACTTACATGGGATTTGACGATCCTAACA
ATGCAGCAGCAGCTCAAGTAGGTCTTAAAGACTTTGATGCTTTGGTTGACAATGCAGCTAAAGAAACAAGCGACCTCAAC
GTACGTTATGAACGTTATGCAGAGGCACAAGCTTGGTTGGAAGATAGCTCACTCTTCATGCCACTTATGGTTAACAAGGG
TGCAGCTCCAATGGTAGCTCGTTTGACACCATTCTCAGGAGCCTACTCTCAAGTAGGACCTAAAGGTTCTGACAGATACT
TCAAGTACCTCGAACCTCAAAAAGATGTTGTCACTAAGAAAAACTATGATAAAGCCCGTGAAAGCTGGCTTAAAGAAAAG
TCTAAGTCCAACGAAAAAGCTCAAAAAGACCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

75.457

100

0.755
  amiA3 Streptococcus thermophilus LMG 18311

75.038

100

0.752
  amiA3 Streptococcus thermophilus LMD-9

74.734

100

0.748